C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plexin A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031398 Plxna3 10090 + X:74329066-74344689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004326 Plxna3-001 74329066-74344689 protein_coding
  ENSMUST00000136114 Plxna3-003 74329066-74332243 processed_transcript
  ENSMUST00000137484 Plxna3-009 74341587-74343945 retained_intron
  ENSMUST00000139323 Plxna3-006 74335232-74336336 retained_intron
  ENSMUST00000142236 Plxna3-004 74333746-74334703 retained_intron
  ENSMUST00000148726 Plxna3-008 74338349-74339159 retained_intron
  ENSMUST00000152317 Plxna3-007 74338266-74339316 retained_intron
  ENSMUST00000152376 Plxna3-005 74334326-74335839 retained_intron
  ENSMUST00000154062 Plxna3-002 74332457-74344683 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004326ENSMUST00000137484ENSMUST00000148726ENSMUST00000152376ENSMUST00000154062
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004326 4.081±2.64 3.625±0.94 1.965±0.05 28.748±19.26 4.310±1.08 2.534±0.42 0.233±0.17 0.720±0.36 0.604±0.46 1.789±0.14 0.103±0.07 8.945±3.05 0.606±0.43 0.206±0.06
ENSMUST00000137484 N/A N/A N/A N/A N/A N/A 0.624±0.00 1.162±0.00 0.992±0.00 N/A 0.177±0.00 N/A N/A N/A
ENSMUST00000148726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.296±0.00
ENSMUST00000152376 N/A N/A N/A N/A N/A N/A N/A N/A 0.324±0.06 N/A 0.102±0.00 N/A N/A N/A
ENSMUST00000154062 1.083±0.65 1.238±0.00 0.648±0.00 10.821±0.00 1.621±0.00 1.002±0.17 N/A 0.272±0.08 0.221±0.06 0.625±0.05 0.079±0.06 1.638±0.08 0.188±0.11 0.063±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K8 CIL_0006K8_0002 CGP X:74313033-74344689
CIL_0003LD CIL_0003LD_0002 CGP X:74329066-74353618

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0007411 IMP axon guidance
GO:0016021 IEA integral component of membrane
GO:0017154 IMP semaphorin receptor activity
GO:0021612 IMP facial nerve structural organization
GO:0021637 IMP trigeminal nerve structural organization
GO:0021766 IMP hippocampus development
GO:0021785 IMP branchiomotor neuron axon guidance
GO:0021860 IMP pyramidal neuron development
GO:0048843 IGI negative regulation of axon extension involved in axon guidance
GO:0050919 IGI negative chemotaxis
GO:0051495 IMP positive regulation of cytoskeleton organization
GO:1902287 IMP semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007172 plxna3 plexin A3 protein_coding Danio_rerio
ENSG00000130827 PLXNA3 plexin A3 protein_coding Homo_sapiens

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