C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369682 PLXNA3-001 ENSG00000130827 9606 + X:154458281-154473646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369682
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369682 1.019±0.00 1.844±0.00 0.092±0.00 1.472±0.00 1.877±1.15 2.051±1.53 1.098±0.00 0.849±0.79 0.317±0.00 2.367±1.47 0.577±0.49 8.956±5.99 2.543±0.23 2.600±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K8 CIL_0006K8_0001 CGP X:154444126-154473646
CIL_0003LD CIL_0003LD_0001 CGP X:154458281-154479257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002116 TAS semaphorin receptor complex
GO:0004872 IEA receptor activity
GO:0004888 NAS transmembrane signaling receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005886 TAS plasma membrane
GO:0007165 IEA signal transduction
GO:0007275 TAS:IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017154 IEA semaphorin receptor activity
GO:0021612 IEA facial nerve structural organization
GO:0021637 IEA trigeminal nerve structural organization
GO:0021766 IEA hippocampus development
GO:0021785 IEA branchiomotor neuron axon guidance
GO:0021860 IEA pyramidal neuron development
GO:0048843 IEA negative regulation of axon extension involved in axon guidance
GO:0050919 IEA negative chemotaxis
GO:0051495 IEA positive regulation of cytoskeleton organization
GO:0071526 NAS semaphorin-plexin signaling pathway
GO:1902287 IEA semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004326 Plxna3-001 protein_coding Mus_musculus 0 6429
ENSMUST00000154062 Plxna3-002 retained_intron Mus_musculus 0 2270
ENSMUST00000049845 Plxna1-201 protein_coding Mus_musculus 0 1550
ENSMUST00000163139 Plxna1-202 protein_coding Mus_musculus 0 1550
ENSDART00000079699 plxna3-201 protein_coding Danio_rerio 0 1400
ENSDART00000044000 plxna3-001 protein_coding Danio_rerio 0 1400
ENSMUST00000115096 Plxna4-001 protein_coding Mus_musculus 0 1107
ENSDART00000147998 PLXNA2-001 protein_coding Danio_rerio 0 898
ENSMUST00000152317 Plxna3-007 retained_intron Mus_musculus 0 662
ENSMUST00000148726 Plxna3-008 retained_intron Mus_musculus 0 579
ENSMUST00000137484 Plxna3-009 retained_intron Mus_musculus 0 470
ENSMUST00000152376 Plxna3-005 retained_intron Mus_musculus 0 411
ENSMUST00000136114 Plxna3-003 processed_transcript Mus_musculus 0 357
ENSMUST00000139323 Plxna3-006 retained_intron Mus_musculus 0 285

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