C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: charged multivesicular body protein 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131165 CHMP1A 9606 - 16:89644431-89657845 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397901 CHMP1A-001 89644431-89657845 protein_coding
  ENST00000535997 CHMP1A-002 89644463-89657709 protein_coding
  ENST00000547614 CHMP1A-010 89647044-89657721 processed_transcript
  ENST00000547687 CHMP1A-004 89644435-89646880 retained_intron
  ENST00000548650 CHMP1A-007 89646955-89649539 retained_intron
  ENST00000549139 CHMP1A-008 89645836-89649593 retained_intron
  ENST00000549328 CHMP1A-009 89645955-89657721 nonsense_mediated_decay
  ENST00000550102 CHMP1A-011 89645889-89657650 protein_coding
  ENST00000550872 CHMP1A-005 89649179-89657697 retained_intron
  ENST00000551981 CHMP1A-006 89646912-89657605 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397901ENST00000535997ENST00000547687ENST00000549328ENST00000550102ENST00000550872
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397901 16.614±0.00 11.145±0.00 4.083±0.00 8.108±4.26 16.892±14.48 7.888±4.08 3.797±3.53 13.553±12.18 6.885±5.32 6.772±3.43 7.360±3.72 23.901±18.79 30.798±3.14 29.135±6.08
ENST00000535997 13.659±0.00 16.131±0.00 N/A 9.385±0.00 N/A 5.733±0.00 4.208±0.00 10.275±0.00 N/A 5.635±0.00 3.256±0.00 4.455±3.67 9.686±2.18 14.941±0.00
ENST00000547687 N/A 6.032±0.00 N/A N/A N/A N/A N/A N/A 0.837±0.00 N/A N/A 0.783±0.00 N/A N/A
ENST00000549328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.031±0.00 N/A N/A
ENST00000550102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.411±0.00 N/A N/A
ENST00000550872 N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000334 CIL_000334_0001 CGP 16:89613308-89657845
CIL_000333 CIL_000333_0001 CGP 16:89644431-89671272

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0000910 IMP cytokinesis
GO:0005515 IPI protein binding
GO:0005769 IDA early endosome
GO:0005815 IDA microtubule organizing center
GO:0006351 IEA transcription, DNA-templated
GO:0006508 TAS proteolysis
GO:0007034 IEA vacuolar transport
GO:0007076 IDA mitotic chromosome condensation
GO:0008237 TAS metallopeptidase activity
GO:0008270 TAS zinc ion binding
GO:0012505 IDA endomembrane system
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IDA vesicle-mediated transport
GO:0016363 IDA nuclear matrix
GO:0016458 IDA gene silencing
GO:0019904 IPI protein domain specific binding
GO:0042803 IPI protein homodimerization activity
GO:0045014 IDA negative regulation of transcription by glucose
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009802 chmp1a chromatin modifying protein 1A protein_coding Danio_rerio
ENSMUSG00000000743 Chmp1a charged multivesicular body protein 1A protein_coding Mus_musculus

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