C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: charged multivesicular body protein 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397901 CHMP1A-001 ENSG00000131165 9606 - 16:89644431-89657845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397901 16.614±0.00 11.145±0.00 4.083±0.00 8.108±4.26 16.892±14.48 7.888±4.08 3.797±3.53 13.553±12.18 6.885±5.32 6.772±3.43 7.360±3.72 23.901±18.79 30.798±3.14 29.135±6.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000334 CIL_000334_0001 CGP 16:89613308-89657845
CIL_000333 CIL_000333_0001 CGP 16:89644431-89671272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0000910 IMP cytokinesis
GO:0005515 IPI protein binding
GO:0005769 IDA early endosome
GO:0005815 IDA microtubule organizing center
GO:0006351 IEA transcription, DNA-templated
GO:0006508 TAS proteolysis
GO:0007034 IEA vacuolar transport
GO:0007076 IDA mitotic chromosome condensation
GO:0008237 TAS metallopeptidase activity
GO:0008270 TAS zinc ion binding
GO:0012505 IDA endomembrane system
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IDA vesicle-mediated transport
GO:0016363 IDA nuclear matrix
GO:0016458 IDA gene silencing
GO:0019904 IPI protein domain specific binding
GO:0042803 IPI protein homodimerization activity
GO:0045014 IDA negative regulation of transcription by glucose
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000759 Chmp1a-001 protein_coding Mus_musculus 0 802
ENSMUST00000167655 Chmp1a-003 retained_intron Mus_musculus 0 749
ENSMUST00000172336 Chmp1a-002 retained_intron Mus_musculus 0.000003 58

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