| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000000743-ENSMUSG00000048478 |
CGP |
10090 |
8:123204264-123222045  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_000333_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000131165' => 'charged multivesicular body protein 1A',
'ENSG00000167523' => 'spermatogenesis associated 33',
'ENSMUSG00000000743' => 'charged multivesicular body protein 1A',
'ENSMUSG00000048478' => 'spermatogenesis associated 33',
'ENSMUSG00000069862' => 'ribosomal protein S12, pseudogene 9'
),
'gene_name_arr' => array(
'ENSG00000131165' => 'CHMP1A',
'ENSG00000167523' => 'SPATA33',
'ENSMUSG00000000743' => 'Chmp1a',
'ENSMUSG00000048478' => 'Spata33',
'ENSMUSG00000069862' => 'Rps12-ps9'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 11 => 'Heart',
(int) 14 => 'Kidney',
(int) 17 => 'Liver',
(int) 20 => 'Lung',
(int) 22 => 'Muscle',
(int) 24 => 'Ovary',
(int) 30 => 'Placenta',
(int) 32 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 25,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000397901' => array(
'start' => '89644431',
'end' => '89657845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-001'
),
'ENST00000535997' => array(
'start' => '89644463',
'end' => '89657709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-002'
),
'ENST00000547614' => array(
'start' => '89647044',
'end' => '89657721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CHMP1A-010'
),
'ENST00000547687' => array(
'start' => '89644435',
'end' => '89646880',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-004'
),
'ENST00000548650' => array(
'start' => '89646955',
'end' => '89649539',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-007'
),
'ENST00000549139' => array(
'start' => '89645836',
'end' => '89649593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-008'
),
'ENST00000549328' => array(
'start' => '89645955',
'end' => '89657721',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CHMP1A-009'
),
'ENST00000550102' => array(
'start' => '89645889',
'end' => '89657650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-011'
),
'ENST00000550872' => array(
'start' => '89649179',
'end' => '89657697',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-005'
),
'ENST00000551981' => array(
'start' => '89646912',
'end' => '89657605',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-006'
),
'ENST00000301031' => array(
'start' => '89657802',
'end' => '89671267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-001'
),
'ENST00000457689' => array(
'start' => '89657838',
'end' => '89670297',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-003'
),
'ENST00000564238' => array(
'start' => '89657871',
'end' => '89661508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-004'
),
'ENST00000565890' => array(
'start' => '89657829',
'end' => '89671272',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-002'
),
'ENST00000566204' => array(
'start' => '89657812',
'end' => '89669631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-006'
),
'ENST00000566857' => array(
'start' => '89660828',
'end' => '89661508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA33-008'
),
'ENST00000567827' => array(
'start' => '89657861',
'end' => '89668044',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-007'
),
'ENST00000568929' => array(
'start' => '89658102',
'end' => '89661483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-005'
),
'ENST00000579310' => array(
'start' => '89657804',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-201'
),
'ENST00000611218' => array(
'start' => '89658047',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-202'
),
'ENSMUST00000000759' => array(
'start' => '123204264',
'end' => '123212760',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Chmp1a-001'
),
'ENSMUST00000167655' => array(
'start' => '123205605',
'end' => '123209769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-003'
),
'ENSMUST00000172336' => array(
'start' => '123209587',
'end' => '123212763',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-002'
),
'ENSMUST00000060133' => array(
'start' => '123212858',
'end' => '123222045',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata33-201'
),
'ENSMUST00000139165' => array(
'start' => '123206623',
'end' => '123207021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps9-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
'ENSG00000131165' => array(
[maximum depth reached]
),
'ENSG00000167523' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adrenal',
(int) 26 => 'Liver',
(int) 27 => 'Ovary',
(int) 28 => 'Ovary',
(int) 29 => 'Ovary',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Testis',
(int) 33 => 'Heart',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000131165' => 'charged multivesicular body protein 1A',
'ENSG00000167523' => 'spermatogenesis associated 33',
'ENSMUSG00000000743' => 'charged multivesicular body protein 1A',
'ENSMUSG00000048478' => 'spermatogenesis associated 33',
'ENSMUSG00000069862' => 'ribosomal protein S12, pseudogene 9'
)
$gene_name_arr = array(
'ENSG00000131165' => 'CHMP1A',
'ENSG00000167523' => 'SPATA33',
'ENSMUSG00000000743' => 'Chmp1a',
'ENSMUSG00000048478' => 'Spata33',
'ENSMUSG00000069862' => 'Rps12-ps9'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_000333_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '89644431',
'seq_end' => '89671272',
'region_length' => '26841',
'region_type' => 'CGP',
'el_id' => 'ENSG00000131165-ENSG00000167523'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_000333_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123204264',
'seq_end' => '123222045',
'region_length' => '17781',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000000743-ENSMUSG00000048478'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 11 => 'Heart',
(int) 14 => 'Kidney',
(int) 17 => 'Liver',
(int) 20 => 'Lung',
(int) 22 => 'Muscle',
(int) 24 => 'Ovary',
(int) 30 => 'Placenta',
(int) 32 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 25
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000397901' => array(
'start' => '89644431',
'end' => '89657845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-001'
),
'ENST00000535997' => array(
'start' => '89644463',
'end' => '89657709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-002'
),
'ENST00000547614' => array(
'start' => '89647044',
'end' => '89657721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CHMP1A-010'
),
'ENST00000547687' => array(
'start' => '89644435',
'end' => '89646880',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-004'
),
'ENST00000548650' => array(
'start' => '89646955',
'end' => '89649539',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-007'
),
'ENST00000549139' => array(
'start' => '89645836',
'end' => '89649593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-008'
),
'ENST00000549328' => array(
'start' => '89645955',
'end' => '89657721',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CHMP1A-009'
),
'ENST00000550102' => array(
'start' => '89645889',
'end' => '89657650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-011'
),
'ENST00000550872' => array(
'start' => '89649179',
'end' => '89657697',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-005'
),
'ENST00000551981' => array(
'start' => '89646912',
'end' => '89657605',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-006'
),
'ENST00000301031' => array(
'start' => '89657802',
'end' => '89671267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-001'
),
'ENST00000457689' => array(
'start' => '89657838',
'end' => '89670297',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-003'
),
'ENST00000564238' => array(
'start' => '89657871',
'end' => '89661508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-004'
),
'ENST00000565890' => array(
'start' => '89657829',
'end' => '89671272',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-002'
),
'ENST00000566204' => array(
'start' => '89657812',
'end' => '89669631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-006'
),
'ENST00000566857' => array(
'start' => '89660828',
'end' => '89661508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA33-008'
),
'ENST00000567827' => array(
'start' => '89657861',
'end' => '89668044',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-007'
),
'ENST00000568929' => array(
'start' => '89658102',
'end' => '89661483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-005'
),
'ENST00000579310' => array(
'start' => '89657804',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-201'
),
'ENST00000611218' => array(
'start' => '89658047',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-202'
),
'ENSMUST00000000759' => array(
'start' => '123204264',
'end' => '123212760',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Chmp1a-001'
),
'ENSMUST00000167655' => array(
'start' => '123205605',
'end' => '123209769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-003'
),
'ENSMUST00000172336' => array(
'start' => '123209587',
'end' => '123212763',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-002'
),
'ENSMUST00000060133' => array(
'start' => '123212858',
'end' => '123222045',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata33-201'
),
'ENSMUST00000139165' => array(
'start' => '123206623',
'end' => '123207021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps9-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
'ENSG00000131165' => array(
[maximum depth reached]
),
'ENSG00000167523' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adrenal',
(int) 26 => 'Liver',
(int) 27 => 'Ovary',
(int) 28 => 'Ovary',
(int) 29 => 'Ovary',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Testis',
(int) 33 => 'Heart',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_000333_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123204264',
'seq_end' => '123222045',
'region_length' => '17781',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000000743-ENSMUSG00000048478'
)
)
$gene_el = array(
'ENST00000301031' => array(
'Liver' => array(
'average_FPKM' => '0.302',
'stddev_FPKM' => '0.00'
)
),
'ENST00000457689' => array(
'Testis' => array(
'average_FPKM' => '22.208',
'stddev_FPKM' => '0.00'
)
),
'ENST00000564238' => array(),
'ENST00000565890' => array(
'Heart' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.502',
'stddev_FPKM' => '0.00'
)
),
'ENST00000566204' => array(
'Testis' => array(
'average_FPKM' => '47.538',
'stddev_FPKM' => '0.00'
)
),
'ENST00000566857' => array(),
'ENST00000567827' => array(),
'ENST00000568929' => array(),
'ENST00000579310' => array(
'Testis' => array(
'average_FPKM' => '64.230',
'stddev_FPKM' => '0.00'
)
),
'ENST00000611218' => array()
)
$gene_key = 'ENSG00000167523'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000611218'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000131165' => 'charged multivesicular body protein 1A',
'ENSG00000167523' => 'spermatogenesis associated 33',
'ENSMUSG00000000743' => 'charged multivesicular body protein 1A',
'ENSMUSG00000048478' => 'spermatogenesis associated 33',
'ENSMUSG00000069862' => 'ribosomal protein S12, pseudogene 9'
),
'gene_name_arr' => array(
'ENSG00000131165' => 'CHMP1A',
'ENSG00000167523' => 'SPATA33',
'ENSMUSG00000000743' => 'Chmp1a',
'ENSMUSG00000048478' => 'Spata33',
'ENSMUSG00000069862' => 'Rps12-ps9'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 11 => 'Heart',
(int) 14 => 'Kidney',
(int) 17 => 'Liver',
(int) 20 => 'Lung',
(int) 22 => 'Muscle',
(int) 24 => 'Ovary',
(int) 30 => 'Placenta',
(int) 32 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 25,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000397901' => array(
'start' => '89644431',
'end' => '89657845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-001'
),
'ENST00000535997' => array(
'start' => '89644463',
'end' => '89657709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-002'
),
'ENST00000547614' => array(
'start' => '89647044',
'end' => '89657721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CHMP1A-010'
),
'ENST00000547687' => array(
'start' => '89644435',
'end' => '89646880',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-004'
),
'ENST00000548650' => array(
'start' => '89646955',
'end' => '89649539',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-007'
),
'ENST00000549139' => array(
'start' => '89645836',
'end' => '89649593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-008'
),
'ENST00000549328' => array(
'start' => '89645955',
'end' => '89657721',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CHMP1A-009'
),
'ENST00000550102' => array(
'start' => '89645889',
'end' => '89657650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-011'
),
'ENST00000550872' => array(
'start' => '89649179',
'end' => '89657697',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-005'
),
'ENST00000551981' => array(
'start' => '89646912',
'end' => '89657605',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-006'
),
'ENST00000301031' => array(
'start' => '89657802',
'end' => '89671267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-001'
),
'ENST00000457689' => array(
'start' => '89657838',
'end' => '89670297',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-003'
),
'ENST00000564238' => array(
'start' => '89657871',
'end' => '89661508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-004'
),
'ENST00000565890' => array(
'start' => '89657829',
'end' => '89671272',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-002'
),
'ENST00000566204' => array(
'start' => '89657812',
'end' => '89669631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-006'
),
'ENST00000566857' => array(
'start' => '89660828',
'end' => '89661508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA33-008'
),
'ENST00000567827' => array(
'start' => '89657861',
'end' => '89668044',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-007'
),
'ENST00000568929' => array(
'start' => '89658102',
'end' => '89661483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-005'
),
'ENST00000579310' => array(
'start' => '89657804',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-201'
),
'ENST00000611218' => array(
'start' => '89658047',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-202'
),
'ENSMUST00000000759' => array(
'start' => '123204264',
'end' => '123212760',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Chmp1a-001'
),
'ENSMUST00000167655' => array(
'start' => '123205605',
'end' => '123209769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-003'
),
'ENSMUST00000172336' => array(
'start' => '123209587',
'end' => '123212763',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-002'
),
'ENSMUST00000060133' => array(
'start' => '123212858',
'end' => '123222045',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata33-201'
),
'ENSMUST00000139165' => array(
'start' => '123206623',
'end' => '123207021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps9-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
'ENSG00000131165' => array(
[maximum depth reached]
),
'ENSG00000167523' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adrenal',
(int) 26 => 'Liver',
(int) 27 => 'Ovary',
(int) 28 => 'Ovary',
(int) 29 => 'Ovary',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Testis',
(int) 33 => 'Heart',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000131165' => 'charged multivesicular body protein 1A',
'ENSG00000167523' => 'spermatogenesis associated 33',
'ENSMUSG00000000743' => 'charged multivesicular body protein 1A',
'ENSMUSG00000048478' => 'spermatogenesis associated 33',
'ENSMUSG00000069862' => 'ribosomal protein S12, pseudogene 9'
)
$gene_name_arr = array(
'ENSG00000131165' => 'CHMP1A',
'ENSG00000167523' => 'SPATA33',
'ENSMUSG00000000743' => 'Chmp1a',
'ENSMUSG00000048478' => 'Spata33',
'ENSMUSG00000069862' => 'Rps12-ps9'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_000333_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '89644431',
'seq_end' => '89671272',
'region_length' => '26841',
'region_type' => 'CGP',
'el_id' => 'ENSG00000131165-ENSG00000167523'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_000333_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123204264',
'seq_end' => '123222045',
'region_length' => '17781',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000000743-ENSMUSG00000048478'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 11 => 'Heart',
(int) 14 => 'Kidney',
(int) 17 => 'Liver',
(int) 20 => 'Lung',
(int) 22 => 'Muscle',
(int) 24 => 'Ovary',
(int) 30 => 'Placenta',
(int) 32 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 25
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000397901' => array(
'start' => '89644431',
'end' => '89657845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-001'
),
'ENST00000535997' => array(
'start' => '89644463',
'end' => '89657709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-002'
),
'ENST00000547614' => array(
'start' => '89647044',
'end' => '89657721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CHMP1A-010'
),
'ENST00000547687' => array(
'start' => '89644435',
'end' => '89646880',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-004'
),
'ENST00000548650' => array(
'start' => '89646955',
'end' => '89649539',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-007'
),
'ENST00000549139' => array(
'start' => '89645836',
'end' => '89649593',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-008'
),
'ENST00000549328' => array(
'start' => '89645955',
'end' => '89657721',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CHMP1A-009'
),
'ENST00000550102' => array(
'start' => '89645889',
'end' => '89657650',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CHMP1A-011'
),
'ENST00000550872' => array(
'start' => '89649179',
'end' => '89657697',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-005'
),
'ENST00000551981' => array(
'start' => '89646912',
'end' => '89657605',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CHMP1A-006'
),
'ENST00000301031' => array(
'start' => '89657802',
'end' => '89671267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-001'
),
'ENST00000457689' => array(
'start' => '89657838',
'end' => '89670297',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-003'
),
'ENST00000564238' => array(
'start' => '89657871',
'end' => '89661508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-004'
),
'ENST00000565890' => array(
'start' => '89657829',
'end' => '89671272',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-002'
),
'ENST00000566204' => array(
'start' => '89657812',
'end' => '89669631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-006'
),
'ENST00000566857' => array(
'start' => '89660828',
'end' => '89661508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA33-008'
),
'ENST00000567827' => array(
'start' => '89657861',
'end' => '89668044',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA33-007'
),
'ENST00000568929' => array(
'start' => '89658102',
'end' => '89661483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-005'
),
'ENST00000579310' => array(
'start' => '89657804',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-201'
),
'ENST00000611218' => array(
'start' => '89658047',
'end' => '89670456',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA33-202'
),
'ENSMUST00000000759' => array(
'start' => '123204264',
'end' => '123212760',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Chmp1a-001'
),
'ENSMUST00000167655' => array(
'start' => '123205605',
'end' => '123209769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-003'
),
'ENSMUST00000172336' => array(
'start' => '123209587',
'end' => '123212763',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Chmp1a-002'
),
'ENSMUST00000060133' => array(
'start' => '123212858',
'end' => '123222045',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata33-201'
),
'ENSMUST00000139165' => array(
'start' => '123206623',
'end' => '123207021',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rps12-ps9-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_000333_0001' => array(
'genes_in_region' => array(
'ENSG00000131165' => array(
[maximum depth reached]
),
'ENSG00000167523' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Lung',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Testis',
(int) 25 => 'Adrenal',
(int) 26 => 'Liver',
(int) 27 => 'Ovary',
(int) 28 => 'Ovary',
(int) 29 => 'Ovary',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Testis',
(int) 33 => 'Heart',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_000333_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123204264',
'seq_end' => '123222045',
'region_length' => '17781',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000000743-ENSMUSG00000048478'
)
)
$gene_el = array(
'ENST00000301031' => array(
'Liver' => array(
'average_FPKM' => '0.302',
'stddev_FPKM' => '0.00'
)
),
'ENST00000457689' => array(
'Testis' => array(
'average_FPKM' => '22.208',
'stddev_FPKM' => '0.00'
)
),
'ENST00000564238' => array(),
'ENST00000565890' => array(
'Heart' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.502',
'stddev_FPKM' => '0.00'
)
),
'ENST00000566204' => array(
'Testis' => array(
'average_FPKM' => '47.538',
'stddev_FPKM' => '0.00'
)
),
'ENST00000566857' => array(),
'ENST00000567827' => array(),
'ENST00000568929' => array(),
'ENST00000579310' => array(
'Testis' => array(
'average_FPKM' => '64.230',
'stddev_FPKM' => '0.00'
)
),
'ENST00000611218' => array()
)
$gene_key = 'ENSG00000167523'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000611218'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(CHMP1A)