C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 25 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131475 VPS25 9606 + 17:42773436-42779599 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253794 VPS25-001 42773436-42779599 protein_coding
  ENST00000589219 VPS25-006 42773464-42775348 retained_intron
  ENST00000589520 VPS25-005 42773508-42779374 protein_coding
  ENST00000589577 VPS25-004 42773469-42776320 nonsense_mediated_decay
  ENST00000590339 VPS25-002 42773480-42779006 protein_coding
  ENST00000591584 VPS25-003 42773458-42774328 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253794ENST00000590339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253794 15.136±0.00 23.800±0.00 1.143±0.00 9.407±2.65 11.409±6.85 8.648±4.04 5.919±4.41 24.962±19.94 14.971±12.37 8.148±6.03 11.029±1.55 44.370±26.34 46.870±16.89 18.118±4.41
ENST00000590339 N/A N/A 0.953±0.00 N/A N/A N/A N/A N/A N/A N/A 2.808±0.00 94.225±0.00 40.439±0.00 18.318±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JZ CIL_0004JZ_0001 CGP 17:42758447-42779599
CIL_0004HC CIL_0004HC_0001 CGP 17:42773436-42796936

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0010008 IDA endosome membrane
GO:0015031 IEA protein transport
GO:0016197 TAS endosomal transport
GO:0042803 IPI protein homodimerization activity
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059079 vps25 vacuolar protein sorting 25 (yeast) protein_coding Danio_rerio
ENSMUSG00000078656 Vps25 vacuolar protein sorting 25 (yeast) protein_coding Mus_musculus

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