C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004HC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131475-ENSG00000126562 CGP 9606 17:42773436-42796936
GeneTranscriptPositionBiotype
ENSG00000126562 (WNK4)
WNK lysine deficient protein kinase 4 		ENST00000246914 (WNK4-001) 42780678-42796936 protein_coding
ENST00000587705 (WNK4-006) 42785327-42788395 processed_transcript
ENST00000587745 (WNK4-007) 42793715-42795742 protein_coding
ENST00000591448 (WNK4-002) 42780681-42796936 nonsense_mediated_decay
ENST00000592072 (WNK4-004) 42785327-42794489 retained_intron
ENST00000592669 (WNK4-005) 42783609-42784453 retained_intron
ENSG00000131475 (VPS25)
vacuolar protein sorting 25 homolog (S. cerevisiae) 		ENST00000253794 (VPS25-001) 42773436-42779599 protein_coding
ENST00000589219 (VPS25-006) 42773464-42775348 retained_intron
ENST00000589520 (VPS25-005) 42773508-42779374 protein_coding
ENST00000589577 (VPS25-004) 42773469-42776320 nonsense_mediated_decay
ENST00000590339 (VPS25-002) 42773480-42779006 protein_coding
ENST00000591584 (VPS25-003) 42773458-42774328 retained_intron
ENSG00000183978 (COA3)
cytochrome c oxidase assembly factor 3 		ENST00000328434 (COA3-001) 42797634-42798704 protein_coding
ENST00000586680 (COA3-002) 42795147-42798690 nonsense_mediated_decay
CIL_0004HC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078656-ENSMUSG00000035112 CGP 10090 11:101253707-101277409
GeneTranscriptPositionBiotype
ENSMUSG00000035112 (Wnk4)
WNK lysine deficient protein kinase 4 		ENSMUST00000103108 (Wnk4-001) 101260598-101277409 protein_coding
ENSMUST00000139487 (Wnk4-002) 101260567-101277409 nonsense_mediated_decay
ENSMUST00000147741 (Wnk4-004) 101260655-101277274 nonsense_mediated_decay
ENSMUST00000170056 (Wnk4-003) 101265308-101274129 nonsense_mediated_decay
ENSMUST00000170372 (Wnk4-005) 101276646-101277406 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HC_0001ENSG00000126562ENST00000246914ENST00000587705ENST00000587745ENST00000591448ENST00000592072ENST00000592669ENSG00000131475ENST00000253794ENST00000589219ENST00000589520ENST00000589577ENST00000590339ENST00000591584ENSG00000183978ENST00000328434ENST00000586680CIL_0004HC_0002ENSMUSG00000035112ENSMUST00000103108ENSMUST00000139487ENSMUST00000147741ENSMUST00000170056ENSMUST00000170372
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HC_0001ENSG00000126562ENST00000246914ENST00000591448ENST00000592072ENSG00000131475ENST00000253794ENST00000590339ENSG00000183978ENST00000328434ENST00000586680CIL_0004HC_0002ENSMUSG00000035112ENSMUST00000103108ENSMUST00000139487ENSMUST00000147741ENSMUST00000170372
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126562 ENST00000246914 N/A N/A N/A N/A 0.782±0.00 N/A N/A 9.447±0.00 N/A N/A N/A 12.220±0.82 N/A N/A
ENST00000587705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.324±0.00
ENST00000592072 N/A N/A 1.972±0.00 N/A 1.359±0.00 N/A N/A N/A 0.423±0.00 N/A N/A 1.367±0.00 N/A N/A
ENST00000592669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000131475 ENST00000253794 15.136±0.00 23.800±0.00 1.143±0.00 9.407±2.65 11.409±6.85 8.648±4.04 5.919±4.41 24.962±19.94 14.971±12.37 8.148±6.03 11.029±1.55 44.370±26.34 46.870±16.89 18.118±4.41
ENST00000589219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590339 N/A N/A 0.953±0.00 N/A N/A N/A N/A N/A N/A N/A 2.808±0.00 94.225±0.00 40.439±0.00 18.318±0.00
ENST00000591584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183978 ENST00000328434 28.682±0.00 37.213±0.00 6.514±0.00 33.372±17.64 22.099±19.62 30.306±18.07 14.581±10.84 68.135±57.70 35.584±33.12 15.331±12.06 20.421±7.90 67.473±36.86 41.799±15.39 26.102±16.19
ENST00000586680 N/A N/A N/A N/A N/A 1.659±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035112 ENSMUST00000103108 2.070±1.43 0.108±0.05 2.325±0.92 1.153±0.05 0.182±0.04 6.083±1.46 2.022±1.16 19.870±8.60 1.823±1.29 1.803±0.39 0.068±0.00 2.158±0.84 3.489±2.09 1.061±0.40
ENSMUST00000139487 N/A 0.066±0.00 N/A N/A N/A 1.438±0.08 N/A N/A N/A N/A 0.036±0.01 N/A N/A N/A
ENSMUST00000147741 N/A 0.056±0.00 N/A N/A 0.172±0.06 N/A 0.393±0.11 5.725±0.62 0.193±0.00 N/A 0.069±0.02 2.364±0.44 1.519±0.98 0.419±0.00
ENSMUST00000170056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.03 N/A N/A N/A

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