C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 25 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078656 Vps25 10090 + 11:101253707-101259549 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007533 Vps25-002 101253707-101258049 protein_coding
  ENSMUST00000042477 Vps25-001 101253707-101259549 protein_coding
  ENSMUST00000100414 Vps25-003 101253729-101259545 protein_coding
  ENSMUST00000107280 Vps25-007 101253735-101259323 protein_coding
  ENSMUST00000121331 Vps25-004 101253753-101259056 protein_coding
  ENSMUST00000123529 Vps25-005 101253764-101259210 retained_intron
  ENSMUST00000144306 Vps25-006 101253730-101258916 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000042477ENSMUST00000121331ENSMUST00000144306
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000042477 46.875±6.72 29.831±6.97 36.619±0.47 27.445±7.44 40.526±6.11 25.088±4.24 31.274±4.01 45.546±2.58 35.013±6.74 29.581±2.05 33.438±9.12 44.847±24.87 13.992±1.71
ENSMUST00000121331 N/A N/A N/A 61.403±0.00 N/A N/A N/A N/A N/A N/A 75.160±0.00 109.158±25.58 23.040±0.00
ENSMUST00000144306 N/A 107.618±13.47 N/A N/A N/A 53.100±7.10 N/A N/A 48.999±5.50 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IN CIL_0004IN_0002 CGP 11:101191115-101259546
CIL_0004JZ CIL_0004JZ_0002 CGP 11:101246028-101259549
CIL_0004HC CIL_0004HC_0002 CGP 11:101253707-101277409

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0010008 IEA endosome membrane
GO:0015031 IEA protein transport
GO:0042803 IEA protein homodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059079 vps25 vacuolar protein sorting 25 (yeast) protein_coding Danio_rerio
ENSG00000131475 VPS25 vacuolar protein sorting 25 homolog (S. cerevisiae) protein_coding Homo_sapiens

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