C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lin-28 homolog A (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131914 LIN28A 9606 + 1:26410778-26429722 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254231 LIN28A-201 26410817-26429719 protein_coding
  ENST00000326279 LIN28A-001 26410778-26429722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000254231ENST00000326279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000254231 0.036±0.00 0.037±0.00 N/A 0.034±0.00 0.303±0.26 0.089±0.08 0.029±0.01 0.080±0.00 0.019±0.00 0.045±0.01 N/A 0.018±0.02 0.813±0.60
ENST00000326279 0.067±0.00 0.149±0.00 0.066±0.00 0.098±0.03 0.089±0.00 0.048±0.00 0.033±0.00 0.104±0.00 0.092±0.03 0.065±0.03 0.040±0.00 0.034±0.01 0.400±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007281 IEA germ cell development
GO:0008270 IEA zinc ion binding
GO:0010494 IDA cytoplasmic stress granule
GO:0010586 IEA miRNA metabolic process
GO:0010587 IMP miRNA catabolic process
GO:0019827 IMP stem cell maintenance
GO:0031054 IMP pre-miRNA processing
GO:0031123 IMP RNA 3'-end processing
GO:0031369 IEA translation initiation factor binding
GO:0035198 IEA miRNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045686 IEA negative regulation of glial cell differentiation
GO:0045727 IEA positive regulation of translation
GO:0048863 IEA stem cell differentiation
GO:0060964 IEA regulation of gene silencing by miRNA
GO:1901724 IEA positive regulation of cell proliferation involved in kidney development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004328 CABZ01041200.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000016999 lin28a lin-28 homolog A (C. elegans) protein_coding Danio_rerio
ENSMUSG00000050966 Lin28a lin-28 homolog A (C. elegans) protein_coding Mus_musculus

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