C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lin-28 homolog A (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050966 Lin28a 10090 - 4:134003330-134018841 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051674 Lin28a-001 134003330-134018841 protein_coding
  ENSMUST00000176113 Lin28a-002 134006244-134012386 protein_coding
  ENSMUST00000176292 Lin28a-003 134006250-134009411 protein_coding
  ENSMUST00000176897 Lin28a-004 134007948-134018382 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000051674ENSMUST00000176113ENSMUST00000176897
Transcript ID Adipose Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051674 0.021±0.00 0.082±0.05 0.053±0.01 0.009±0.00 0.295±0.12 0.030±0.01 0.041±0.01 0.171±0.09 6.159±5.25 0.650±0.27
ENSMUST00000176113 N/A N/A 0.139±0.00 N/A N/A N/A 0.216±0.04 N/A N/A 1.250±0.00
ENSMUST00000176897 N/A N/A N/A N/A N/A N/A N/A 0.372±0.10 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007281 IGI germ cell development
GO:0008270 IEA zinc ion binding
GO:0010494 ISS cytoplasmic stress granule
GO:0010586 IDA miRNA metabolic process
GO:0010587 IMP miRNA catabolic process
GO:0019827 IEA stem cell maintenance
GO:0031054 IDA:IMP pre-miRNA processing
GO:0031123 IEA RNA 3'-end processing
GO:0031369 IPI translation initiation factor binding
GO:0035198 IDA miRNA binding
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045686 IDA negative regulation of glial cell differentiation
GO:0045727 IDA positive regulation of translation
GO:0048863 IMP stem cell differentiation
GO:0060964 IGI regulation of gene silencing by miRNA
GO:1901724 IMP positive regulation of cell proliferation involved in kidney development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004328 CABZ01041200.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000016999 lin28a lin-28 homolog A (C. elegans) protein_coding Danio_rerio
ENSG00000131914 LIN28A lin-28 homolog A (C. elegans) protein_coding Homo_sapiens

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