C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-28 homolog A (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326279 LIN28A-001 ENSG00000131914 9606 + 1:26410778-26429722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000326279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000326279 0.067±0.00 0.149±0.00 0.066±0.00 0.098±0.03 0.089±0.00 0.048±0.00 0.033±0.00 0.104±0.00 0.092±0.03 0.065±0.03 0.040±0.00 0.034±0.01 0.400±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007281 IEA germ cell development
GO:0008270 IEA zinc ion binding
GO:0010494 IDA cytoplasmic stress granule
GO:0010586 IEA miRNA metabolic process
GO:0010587 IMP miRNA catabolic process
GO:0019827 IMP stem cell maintenance
GO:0031054 IMP pre-miRNA processing
GO:0031123 IMP RNA 3'-end processing
GO:0031369 IEA translation initiation factor binding
GO:0035198 IEA miRNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045686 IEA negative regulation of glial cell differentiation
GO:0045727 IEA positive regulation of translation
GO:0048863 IEA stem cell differentiation
GO:0060964 IEA regulation of gene silencing by miRNA
GO:1901724 IEA positive regulation of cell proliferation involved in kidney development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051674 Lin28a-001 protein_coding Mus_musculus 0 1061
ENSMUST00000176897 Lin28a-004 protein_coding Mus_musculus 0 488
ENSMUST00000176113 Lin28a-002 protein_coding Mus_musculus 0 379
ENSMUST00000176292 Lin28a-003 protein_coding Mus_musculus 0 375
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000001 64

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