C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-28 homolog A (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254231 LIN28A-201 ENSG00000131914 9606 + 1:26410817-26429719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000254231
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000254231 0.036±0.00 0.037±0.00 0.034±0.00 0.303±0.26 0.089±0.08 0.029±0.01 0.080±0.00 0.019±0.00 0.045±0.01 0.018±0.02 0.813±0.60

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010494 IDA cytoplasmic stress granule
GO:0010587 IMP miRNA catabolic process
GO:0019827 IMP stem cell maintenance
GO:0031054 IMP pre-miRNA processing
GO:0031123 IMP RNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051674 Lin28a-001 protein_coding Mus_musculus 0 1026
ENSMUST00000176897 Lin28a-004 protein_coding Mus_musculus 0 488
ENSMUST00000176113 Lin28a-002 protein_coding Mus_musculus 0 379
ENSMUST00000176292 Lin28a-003 protein_coding Mus_musculus 0 375

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