C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 41
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132128 LRRC41 9606 - 1:46261196-46303608 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343304 LRRC41-201 46278401-46303366 protein_coding
  ENST00000469150 LRRC41-004 46296742-46300780 processed_transcript
  ENST00000472710 LRRC41-002 46278404-46299890 nonsense_mediated_decay
  ENST00000496156 LRRC41-005 46261196-46281161 protein_coding
  ENST00000498402 LRRC41-003 46284167-46303274 nonsense_mediated_decay
  ENST00000615587 LRRC41-006 46278403-46303263 protein_coding
  ENST00000617190 LRRC41-001 46277462-46303608 protein_coding
  ENST00000617760 LRRC41-202 46278401-46286112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343304ENST00000469150ENST00000472710ENST00000496156ENST00000498402ENST00000615587ENST00000617190ENST00000617760
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343304 N/A N/A 2.321±0.00 N/A 2.547±0.75 N/A N/A N/A N/A N/A 5.225±0.00 N/A N/A N/A
ENST00000469150 N/A 1.319±0.00 0.406±0.00 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A 0.890±0.00 N/A N/A
ENST00000472710 N/A N/A N/A N/A N/A N/A N/A 0.363±0.00 N/A N/A N/A N/A N/A N/A
ENST00000496156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.340±0.00 N/A N/A N/A
ENST00000498402 N/A N/A N/A N/A N/A 1.528±0.00 N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A
ENST00000615587 24.183±0.00 11.839±0.00 N/A 6.261±4.75 14.117±0.00 5.974±4.21 6.596±5.54 16.073±0.00 4.475±2.03 12.392±11.87 20.809±0.00 23.771±19.27 26.879±6.45 25.018±0.00
ENST00000617190 N/A N/A N/A N/A 0.520±0.00 N/A 0.244±0.00 N/A N/A N/A 0.834±0.00 5.263±0.00 N/A N/A
ENST00000617760 N/A 7.905±0.00 N/A 3.749±1.49 4.739±0.00 8.001±0.00 3.016±2.09 6.335±3.17 6.934±0.00 4.951±3.41 8.851±5.69 16.402±10.18 21.182±10.48 31.530±18.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000636 CIL_000636_0002 CGP 1:46247688-46303608
CIL_000635 CIL_000635_0002 CGP 1:46261196-46316776

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0016020 IDA membrane
GO:0016567 IEA protein ubiquitination
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000096306 LRRC41 leucine rich repeat containing 41 protein_coding Danio_rerio
ENSMUSG00000028703 Lrrc41 leucine rich repeat containing 41 protein_coding Mus_musculus

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