C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor interacting protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132254 ARFIP2 9606 - 11:6474683-6481479 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254584 ARFIP2-008 6475680-6481312 protein_coding
  ENST00000396777 ARFIP2-001 6476519-6481436 protein_coding
  ENST00000423813 ARFIP2-010 6476814-6481434 protein_coding
  ENST00000445086 ARFIP2-009 6476734-6481343 protein_coding
  ENST00000525235 ARFIP2-005 6478084-6481314 protein_coding
  ENST00000525329 ARFIP2-006 6480707-6481323 retained_intron
  ENST00000529847 ARFIP2-002 6479657-6481343 retained_intron
  ENST00000530410 ARFIP2-003 6479306-6481297 retained_intron
  ENST00000531037 ARFIP2-007 6476554-6481324 nonsense_mediated_decay
  ENST00000614314 ARFIP2-201 6474683-6481479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396777ENST00000423813ENST00000445086ENST00000525235ENST00000531037
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396777 6.352±0.00 N/A 7.581±0.00 5.999±0.00 N/A 4.864±0.00 N/A N/A 3.743±0.00 17.231±10.92 16.977±1.89 N/A
ENST00000423813 N/A N/A N/A N/A N/A N/A N/A 5.942±0.00 6.062±0.00 N/A N/A N/A
ENST00000445086 N/A 28.196±0.00 N/A N/A N/A 22.101±0.00 8.641±0.00 22.068±0.00 N/A N/A N/A 22.819±0.00
ENST00000525235 N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.824±0.00 45.458±0.00 N/A
ENST00000531037 8.460±0.00 N/A 18.239±0.00 7.651±0.00 8.142±0.00 18.790±0.00 8.704±0.00 20.122±0.00 N/A N/A 10.585±2.43 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A8 CIL_0004A8_0001 CGP 11:6448613-6481479
CIL_0004HY CIL_0004HY_0001 CGP 11:6474683-6484679

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001726 IMP ruffle
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005737 TAS cytoplasm
GO:0005886 TAS plasma membrane
GO:0005938 IDA cell cortex
GO:0006928 TAS cellular component movement
GO:0007264 TAS small GTPase mediated signal transduction
GO:0019904 IEA protein domain specific binding
GO:0030032 TAS lamellipodium assembly
GO:0030036 IMP actin cytoskeleton organization
GO:0030742 IPI GTP-dependent protein binding
GO:0031529 TAS ruffle organization
GO:0032588 IDA trans-Golgi network membrane
GO:0048365 TAS Rac GTPase binding
GO:0070273 IDA phosphatidylinositol-4-phosphate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056664 arfip2b ADP-ribosylation factor interacting protein 2b protein_coding Danio_rerio
ENSDARG00000059244 arfip2a ADP-ribosylation factor interacting protein 2a protein_coding Danio_rerio
ENSMUSG00000030881 Arfip2 ADP-ribosylation factor interacting protein 2 protein_coding Mus_musculus

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