C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004A8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000110171-ENSG00000132254 CGP 9606 11:6448613-6481479
GeneTranscriptPositionBiotype
ENSG00000110171 (TRIM3)
tripartite motif containing 3 		ENST00000345851 (TRIM3-001) 6448615-6473984 protein_coding
ENST00000359518 (TRIM3-201) 6448617-6473984 protein_coding
ENST00000525074 (TRIM3-002) 6448614-6474459 protein_coding
ENST00000526845 (TRIM3-010) 6451538-6456144 processed_transcript
ENST00000527237 (TRIM3-013) 6456152-6456611 processed_transcript
ENST00000528227 (TRIM3-006) 6456944-6473923 protein_coding
ENST00000528932 (TRIM3-007) 6457404-6473893 processed_transcript
ENST00000529058 (TRIM3-009) 6456126-6457733 processed_transcript
ENST00000529529 (TRIM3-005) 6458138-6474394 protein_coding
ENST00000530724 (TRIM3-012) 6450169-6451299 processed_transcript
ENST00000532542 (TRIM3-003) 6448617-6453245 retained_intron
ENST00000533064 (TRIM3-011) 6448613-6450391 retained_intron
ENST00000533309 (TRIM3-004) 6448614-6451969 retained_intron
ENST00000536344 (TRIM3-202) 6448617-6473984 protein_coding
ENSG00000132286 (TIMM10B)
translocase of inner mitochondrial membrane 10 homolog B (yeast) 		ENST00000254616 (TIMM10B-001) 6481447-6484679 protein_coding
ENST00000528908 (TIMM10B-004) 6481501-6482285 retained_intron
ENST00000530751 (TIMM10B-005) 6481501-6482798 protein_coding
ENST00000531462 (TIMM10B-007) 6481506-6483060 nonsense_mediated_decay
ENST00000533379 (TIMM10B-006) 6481508-6483058 nonsense_mediated_decay
CIL_0004A8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036989-ENSMUSG00000030881 CGP 10090 7:105604463-105640416
GeneTranscriptPositionBiotype
ENSMUSG00000030881 (Arfip2)
ADP-ribosylation factor interacting protein 2 		ENSMUST00000033171 (Arfip2-004) 105635621-105640314 nonsense_mediated_decay
ENSMUST00000084782 (Arfip2-002) 105635657-105640351 protein_coding
ENSMUST00000126589 (Arfip2-007) 105637120-105637915 processed_transcript
ENSMUST00000127759 (Arfip2-008) 105638587-105640340 retained_intron
ENSMUST00000127853 (Arfip2-006) 105635624-105637902 processed_transcript
ENSMUST00000131446 (Arfip2-001) 105634203-105640416 protein_coding
ENSMUST00000133519 (Arfip2-010) 105637188-105640308 protein_coding
ENSMUST00000134613 (Arfip2-011) 105636902-105638045 processed_transcript
ENSMUST00000137931 (Arfip2-003) 105635656-105640337 nonsense_mediated_decay
ENSMUST00000142173 (Arfip2-005) 105634207-105639914 retained_intron
ENSMUST00000157028 (Arfip2-009) 105637848-105640335 nonsense_mediated_decay
ENSMUSG00000036989 (Trim3)
tripartite motif-containing 3 		ENSMUST00000057525 (Trim3-003) 105610470-105633560 protein_coding
ENSMUST00000106789 (Trim3-001) 105610648-105633537 protein_coding
ENSMUST00000106791 (Trim3-002) 105604463-105633508 protein_coding
ENSMUST00000140882 (Trim3-004) 105619106-105633571 processed_transcript
ENSMUST00000147044 (Trim3-005) 105619383-105633485 protein_coding
ENSMUST00000150363 (Trim3-007) 105617031-105618026 retained_intron
ENSMUST00000153371 (Trim3-006) 105618784-105633525 protein_coding
ENSMUST00000154218 (Trim3-008) 105612308-105613406 retained_intron
ENSMUST00000156581 (Trim3-009) 105611139-105611856 retained_intron
ENSMUSG00000089847 (Timm10b)
translocase of inner mitochondrial membrane 10B 		ENSMUST00000058333 (Timm10b-002) 105640448-105641843 protein_coding
ENSMUST00000106780 (Timm10b-004) 105640571-105643632 protein_coding
ENSMUST00000106783 (Timm10b-001) 105640056-105643637 protein_coding
ENSMUST00000106784 (Timm10b-012) 105640590-105641825 protein_coding
ENSMUST00000106785 (Timm10b-007) 105640552-105651138 protein_coding
ENSMUST00000106786 (Timm10b-010) 105640570-105655748 protein_coding
ENSMUST00000140385 (Timm10b-013) 105640671-105641284 retained_intron
ENSMUST00000140577 (Timm10b-011) 105640589-105641749 processed_transcript
ENSMUST00000149819 (Timm10b-008) 105640564-105651679 nonsense_mediated_decay
ENSMUST00000150479 (Timm10b-003) 105640567-105641839 nonsense_mediated_decay
ENSMUST00000151193 (Timm10b-009) 105640564-105641785 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004A8_0001ENSG00000110171ENST00000345851ENST00000359518ENST00000525074ENST00000526845ENST00000527237ENST00000528227ENST00000528932ENST00000529058ENST00000529529ENST00000530724ENST00000532542ENST00000533064ENST00000533309ENST00000536344ENSG00000132286ENST00000254616ENST00000528908ENST00000530751ENST00000531462ENST00000533379CIL_0004A8_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004A8_0001ENSG00000110171ENST00000345851ENST00000359518ENST00000525074ENST00000526845ENST00000527237ENST00000529058ENST00000529529ENST00000530724ENST00000532542ENST00000533064ENST00000533309ENST00000536344ENSG00000132286ENST00000254616CIL_0004A8_0002ENSMUSG00000030881ENSMUST00000033171ENSMUST00000084782ENSMUST00000127853ENSMUST00000131446ENSMUST00000134613ENSMUST00000137931ENSMUST00000142173ENSMUST00000157028ENSMUSG00000036989ENSMUST00000057525ENSMUST00000106789ENSMUST00000140882ENSMUST00000153371ENSMUST00000154218ENSMUSG00000089847ENSMUST00000058333ENSMUST00000106780ENSMUST00000106783ENSMUST00000106785ENSMUST00000106786
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110171 ENST00000345851 2.205±0.00 3.045±0.00 N/A 3.893±2.39 1.816±0.89 4.244±0.00 1.495±1.43 3.471±0.00 0.780±0.39 2.562±1.99 N/A 5.059±1.57 3.097±1.04 3.628±0.00
ENST00000359518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.248±0.00 N/A N/A N/A
ENST00000525074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.633±0.00
ENST00000526845 N/A N/A N/A N/A N/A N/A 0.406±0.00 N/A N/A N/A N/A 1.831±0.00 N/A N/A
ENST00000527237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.944±0.00 N/A N/A
ENST00000528227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529058 N/A N/A N/A N/A N/A N/A N/A N/A 0.823±0.00 N/A N/A N/A N/A N/A
ENST00000529529 N/A N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000530724 N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A 0.831±0.00 N/A N/A N/A N/A N/A
ENST00000532542 N/A 0.361±0.00 N/A 0.465±0.00 N/A N/A N/A N/A 0.115±0.00 N/A N/A 0.560±0.00 N/A N/A
ENST00000533064 0.652±0.00 2.328±0.00 N/A 2.595±0.00 N/A 1.255±0.00 0.138±0.00 1.464±0.00 N/A 2.479±0.00 0.373±0.00 3.152±0.78 0.720±0.39 0.625±0.00
ENST00000533309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A
ENST00000536344 0.985±0.00 N/A N/A 1.761±0.00 N/A 0.689±0.00 N/A 1.293±0.00 0.532±0.00 N/A 1.424±1.23 2.506±0.00 0.780±0.00 1.182±0.00
ENSG00000132286 ENST00000254616 2.400±0.00 14.044±0.00 N/A 10.766±2.45 13.009±4.10 7.886±2.59 3.459±1.50 12.446±0.00 7.852±3.89 9.107±0.41 1.608±0.00 12.810±4.01 10.175±2.64 13.157±0.00
ENST00000528908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030881 ENSMUST00000033171 N/A N/A N/A N/A N/A 17.826±0.00 N/A 12.507±1.88 N/A N/A N/A 23.245±0.07 18.937±2.13 N/A
ENSMUST00000084782 22.839±3.92 N/A 27.576±8.63 27.741±3.92 17.672±0.00 28.425±2.94 8.443±1.17 22.616±3.78 11.423±1.13 23.847±0.99 10.044±3.81 29.995±6.34 18.537±0.18 N/A
ENSMUST00000126589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127853 30.938±5.15 N/A 28.538±5.23 N/A 20.189±1.59 N/A 7.280±0.00 N/A N/A 31.094±0.00 8.918±0.00 N/A N/A N/A
ENSMUST00000131446 N/A N/A 11.688±0.00 12.450±0.00 N/A N/A N/A N/A 5.755±0.00 N/A 5.968±0.00 6.802±0.82 5.119±1.07 N/A
ENSMUST00000133519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134613 N/A N/A N/A 81.185±0.00 N/A N/A N/A N/A N/A N/A N/A 69.866±0.00 51.594±0.00 N/A
ENSMUST00000137931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.923±0.00 16.831±1.90 N/A
ENSMUST00000142173 N/A N/A N/A N/A 5.964±0.00 N/A N/A N/A N/A N/A N/A 5.104±0.43 3.451±0.00 N/A
ENSMUST00000157028 N/A N/A N/A 51.315±0.00 N/A N/A N/A N/A N/A N/A N/A 45.283±0.00 47.568±7.82 N/A
ENSMUSG00000036989 ENSMUST00000057525 6.222±1.98 5.878±1.13 3.323±0.00 3.492±0.54 5.288±0.80 3.507±1.72 3.309±0.84 6.041±0.77 1.037±0.41 17.674±2.13 N/A 6.078±1.55 0.990±0.13 0.785±0.08
ENSMUST00000106789 12.748±1.78 5.303±1.50 11.928±0.72 26.059±8.81 8.057±2.71 6.546±0.94 6.660±0.40 7.489±1.31 1.929±0.72 29.374±3.30 4.669±0.68 9.757±2.47 5.424±1.76 0.589±0.26
ENSMUST00000106791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140882 14.659±0.00 12.200±1.45 N/A N/A 10.613±0.65 9.777±1.42 N/A 10.524±0.00 N/A 36.601±0.00 N/A 12.630±1.59 N/A N/A
ENSMUST00000147044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153371 N/A 6.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154218 N/A N/A N/A 29.289±0.00 N/A N/A N/A N/A N/A N/A N/A 6.301±0.00 5.777±3.22 N/A
ENSMUST00000156581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089847 ENSMUST00000058333 56.847±10.01 N/A N/A N/A 85.906±2.71 57.885±15.04 26.175±6.15 49.370±6.27 41.563±14.67 58.708±11.32 41.528±0.00 57.004±6.52 32.764±0.27 N/A
ENSMUST00000106780 N/A 111.202±37.70 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106783 N/A N/A N/A N/A 3.950±0.00 19.335±0.86 N/A N/A 5.453±0.00 N/A 2.761±0.00 16.059±0.00 N/A N/A
ENSMUST00000106784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106785 206.214±3.07 282.150±56.34 N/A N/A 291.704±77.12 267.736±69.94 84.947±35.72 147.132±31.37 134.931±36.42 220.914±51.61 N/A 252.553±39.30 N/A N/A
ENSMUST00000106786 N/A 179.757±29.56 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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