C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445086 ARFIP2-009 ENSG00000132254 9606 - 11:6476734-6481343 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalKidneyLiverLungTestisENST00000445086
Transcript ID Adrenal Kidney Liver Lung Testis
ENST00000445086 28.196±0.00 22.101±0.00 8.641±0.00 22.068±0.00 22.819±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A8 CIL_0004A8_0001 CGP 11:6448613-6481479
CIL_0004HY CIL_0004HY_0001 CGP 11:6474683-6484679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IMP ruffle
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005737 TAS cytoplasm
GO:0005886 TAS plasma membrane
GO:0005938 IDA cell cortex
GO:0006928 TAS cellular component movement
GO:0007264 TAS small GTPase mediated signal transduction
GO:0019904 IEA protein domain specific binding
GO:0030032 TAS lamellipodium assembly
GO:0030036 IMP actin cytoskeleton organization
GO:0030742 IPI GTP-dependent protein binding
GO:0031529 TAS ruffle organization
GO:0032588 IDA trans-Golgi network membrane
GO:0048365 TAS Rac GTPase binding
GO:0070273 IDA phosphatidylinositol-4-phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084782 Arfip2-002 protein_coding Mus_musculus 0 1448
ENSMUST00000033171 Arfip2-004 nonsense_mediated_decay Mus_musculus 0 1448
ENSMUST00000142173 Arfip2-005 retained_intron Mus_musculus 0 1448
ENSMUST00000131446 Arfip2-001 protein_coding Mus_musculus 0 1448
ENSMUST00000127853 Arfip2-006 processed_transcript Mus_musculus 0 1086
ENSMUST00000137931 Arfip2-003 nonsense_mediated_decay Mus_musculus 0 1085
ENSMUST00000134613 Arfip2-011 processed_transcript Mus_musculus 0 725
ENSMUST00000133519 Arfip2-010 protein_coding Mus_musculus 0 488
ENSMUST00000157028 Arfip2-009 nonsense_mediated_decay Mus_musculus 0 311
ENSMUST00000126589 Arfip2-007 processed_transcript Mus_musculus 0 235
ENSMUST00000127759 Arfip2-008 retained_intron Mus_musculus 5.99994e-41 172
ENSMUST00000106783 Timm10b-001 protein_coding Mus_musculus 5e-37 159

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