C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000531037 ARFIP2-007 ENSG00000132254 9606 - 11:6476554-6481324 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungPlacentaENST00000531037
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Placenta
ENST00000531037 8.460±0.00 18.239±0.00 7.651±0.00 8.142±0.00 18.790±0.00 8.704±0.00 20.122±0.00 10.585±2.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A8 CIL_0004A8_0001 CGP 11:6448613-6481479
CIL_0004HY CIL_0004HY_0001 CGP 11:6474683-6484679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137931 Arfip2-003 nonsense_mediated_decay Mus_musculus 0 2060
ENSMUST00000127853 Arfip2-006 processed_transcript Mus_musculus 0 1286
ENSMUST00000033171 Arfip2-004 nonsense_mediated_decay Mus_musculus 0 1286
ENSMUST00000142173 Arfip2-005 retained_intron Mus_musculus 0 1286
ENSMUST00000131446 Arfip2-001 protein_coding Mus_musculus 0 1286
ENSMUST00000084782 Arfip2-002 protein_coding Mus_musculus 0 1284
ENSMUST00000133519 Arfip2-010 protein_coding Mus_musculus 0 636
ENSMUST00000157028 Arfip2-009 nonsense_mediated_decay Mus_musculus 0 492
ENSMUST00000134613 Arfip2-011 processed_transcript Mus_musculus 0 359
ENSMUST00000127759 Arfip2-008 retained_intron Mus_musculus 0 318
ENSMUST00000126589 Arfip2-007 processed_transcript Mus_musculus 0 233
ENSMUST00000106783 Timm10b-001 protein_coding Mus_musculus 5e-33 147

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