C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: matrilin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132561 MATN2 9606 + 8:97868840-98036716 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254898 MATN2-201 97869083-98036716 protein_coding
  ENST00000517321 MATN2-013 98016544-98027721 protein_coding
  ENST00000518154 MATN2-006 97931341-98036214 protein_coding
  ENST00000518238 MATN2-011 97950819-97952302 processed_transcript
  ENST00000518370 MATN2-014 98021003-98027678 retained_intron
  ENST00000519582 MATN2-016 98027707-98034310 protein_coding
  ENST00000519585 MATN2-010 97950739-97994596 protein_coding
  ENST00000520016 MATN2-004 97887977-98036212 protein_coding
  ENST00000520160 MATN2-008 97887834-97931106 retained_intron
  ENST00000521041 MATN2-009 97931425-98003734 protein_coding
  ENST00000521689 MATN2-001 97868840-98035978 protein_coding
  ENST00000521952 MATN2-015 98007479-98035703 nonsense_mediated_decay
  ENST00000522025 MATN2-005 97869154-98036214 protein_coding
  ENST00000522135 MATN2-017 98032249-98033772 protein_coding
  ENST00000522270 MATN2-012 97961482-98007502 protein_coding
  ENST00000523490 MATN2-003 97869113-98004286 retained_intron
  ENST00000523561 MATN2-007 98031442-98036158 retained_intron
  ENST00000524308 MATN2-002 97869111-98036210 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254898ENST00000518154ENST00000519582ENST00000520016ENST00000521041ENST00000521689ENST00000521952ENST00000522025ENST00000523490ENST00000524308
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254898 N/A N/A 0.849±0.00 N/A N/A N/A N/A 2.535±0.00 N/A N/A 10.689±0.00 N/A N/A
ENST00000518154 N/A 7.104±0.00 3.971±0.00 2.574±0.00 5.700±0.00 1.857±0.00 3.740±1.52 2.386±0.59 3.817±0.00 N/A 14.518±13.73 9.039±0.90 22.510±0.00
ENST00000519582 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.121±0.00 N/A N/A N/A
ENST00000520016 N/A N/A N/A N/A N/A N/A N/A 4.734±0.00 N/A N/A 1.648±0.77 7.068±0.36 3.612±0.00
ENST00000521041 N/A N/A N/A N/A N/A N/A N/A 22.218±0.00 N/A N/A N/A N/A N/A
ENST00000521689 4.802±0.00 N/A 1.214±0.66 4.428±0.52 2.631±0.52 1.884±0.38 N/A 6.964±0.00 N/A 0.562±0.07 13.223±8.70 6.595±0.11 N/A
ENST00000521952 N/A N/A N/A N/A 4.606±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522025 3.223±0.00 9.481±0.00 N/A 3.629±0.80 4.450±2.52 1.904±1.39 2.950±0.00 1.464±0.00 2.179±1.70 N/A 15.254±10.27 18.608±10.83 11.409±6.01
ENST00000523490 N/A N/A N/A N/A N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A
ENST00000524308 4.840±0.00 10.152±0.00 3.678±0.00 11.771±0.00 5.504±3.96 1.221±0.76 4.904±3.84 1.066±0.00 4.107±2.64 0.396±0.00 19.374±5.65 14.743±3.54 33.758±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KV CIL_0001KV_0001 CGP 8:97775057-98036716

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0007411 IEA axon guidance
GO:0008150 ND biological_process
GO:0008347 IEA glial cell migration
GO:0031012 IDA extracellular matrix
GO:0031104 IEA dendrite regeneration
GO:0031175 IEA neuron projection development
GO:0048678 IEA response to axon injury

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000022324 Matn2 matrilin 2 protein_coding Mus_musculus

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