C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001KV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104341-ENSG00000132561 CGP 9606 8:97775057-98036716
GeneTranscriptPositionBiotype
ENSG00000104341 (LAPTM4B)
lysosomal protein transmembrane 4 beta 		ENST00000445593 (LAPTM4B-001) 97775057-97853013 protein_coding
ENST00000517924 (LAPTM4B-003) 97775849-97819164 protein_coding
ENST00000521545 (LAPTM4B-002) 97775776-97851474 protein_coding
ENST00000619747 (LAPTM4B-201) 97775057-97852598 protein_coding
ENSG00000132561 (MATN2)
matrilin 2 		ENST00000254898 (MATN2-201) 97869083-98036716 protein_coding
ENST00000517321 (MATN2-013) 98016544-98027721 protein_coding
ENST00000518154 (MATN2-006) 97931341-98036214 protein_coding
ENST00000518238 (MATN2-011) 97950819-97952302 processed_transcript
ENST00000518370 (MATN2-014) 98021003-98027678 retained_intron
ENST00000519582 (MATN2-016) 98027707-98034310 protein_coding
ENST00000519585 (MATN2-010) 97950739-97994596 protein_coding
ENST00000520016 (MATN2-004) 97887977-98036212 protein_coding
ENST00000520160 (MATN2-008) 97887834-97931106 retained_intron
ENST00000521041 (MATN2-009) 97931425-98003734 protein_coding
ENST00000521689 (MATN2-001) 97868840-98035978 protein_coding
ENST00000521952 (MATN2-015) 98007479-98035703 nonsense_mediated_decay
ENST00000522025 (MATN2-005) 97869154-98036214 protein_coding
ENST00000522135 (MATN2-017) 98032249-98033772 protein_coding
ENST00000522270 (MATN2-012) 97961482-98007502 protein_coding
ENST00000523490 (MATN2-003) 97869113-98004286 retained_intron
ENST00000523561 (MATN2-007) 98031442-98036158 retained_intron
ENST00000524308 (MATN2-002) 97869111-98036210 protein_coding
ENSG00000156482 (RPL30)
ribosomal protein L30 		ENST00000287038 (RPL30-001) 98041721-98045590 protein_coding
ENST00000396070 (RPL30-009) 98041721-98045544 protein_coding
ENST00000517489 (RPL30-004) 98042645-98045550 retained_intron
ENST00000517805 (RPL30-012) 98042831-98044132 processed_transcript
ENST00000518164 (RPL30-002) 98024851-98045548 processed_transcript
ENST00000518850 (RPL30-010) 98041721-98045545 nonsense_mediated_decay
ENST00000520998 (RPL30-006) 98044433-98045545 retained_intron
ENST00000521112 (RPL30-005) 98044868-98045548 retained_intron
ENST00000521291 (RPL30-007) 98041721-98045514 protein_coding
ENST00000521534 (RPL30-013) 98041719-98043085 retained_intron
ENST00000521726 (RPL30-003) 98041807-98046469 protein_coding
ENST00000522156 (RPL30-011) 98043447-98044241 processed_transcript
ENST00000523172 (RPL30-008) 98041800-98045546 protein_coding
ENSG00000243504 (RPS23P1)
ribosomal protein S23 pseudogene 1 		ENST00000491662 (RPS23P1-001) 97865054-97865485 processed_pseudogene
ENSG00000253639 (SUMO2P18)
SUMO2 pseudogene 18 		ENST00000518873 (SUMO2P18-001) 97858049-97858947 processed_pseudogene
ENSG00000270682 (KB-1907C4.2)
 ENST00000604497 (KB-1907C4.2-001) 97788210-97788357 processed_pseudogene
ENSG00000270861 (KB-1589B1.4)
 ENST00000603405 (KB-1589B1.4-001) 97853021-97853253 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001KV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022257-ENSMUSG00000022324 CGP 10090 15:34238026-34436242
GeneTranscriptPositionBiotype
ENSMUSG00000022257 (Laptm4b)
lysosomal-associated protein transmembrane 4B 		ENSMUST00000022867 (Laptm4b-201) 34238026-34284295 protein_coding
ENSMUSG00000022324 (Matn2)
matrilin 2 		ENSMUST00000022947 (Matn2-201) 34306681-34436242 protein_coding
ENSMUST00000163455 (Matn2-202) 34306680-34436238 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KV_0001ENSG00000104341ENST00000445593ENST00000517924ENST00000521545ENST00000619747ENSG00000132561ENST00000254898ENST00000518154ENST00000519582ENST00000520016ENST00000521041ENST00000521689ENST00000521952ENST00000522025ENST00000523490ENST00000524308ENSG00000156482ENST00000287038ENST00000396070ENSG00000243504ENST00000491662ENSG00000253639ENST00000518873ENSG00000270682ENST00000604497ENSG00000270861ENST00000603405CIL_0001KV_0002ENSMUSG00000022257ENSMUST00000022867ENSMUSG00000022324ENSMUST00000022947ENSMUST00000163455
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104341 ENST00000445593 N/A N/A N/A N/A N/A 0.871±0.00 N/A N/A N/A N/A 1.306±0.00 10.774±0.00 N/A N/A
ENST00000517924 N/A N/A N/A N/A N/A N/A N/A 2.790±0.00 N/A N/A N/A N/A N/A N/A
ENST00000521545 N/A N/A 5.211±0.00 8.835±0.00 9.000±0.00 N/A 15.151±0.00 N/A 6.340±0.00 N/A 20.581±0.00 11.017±0.00 7.035±0.00 N/A
ENST00000619747 17.390±0.00 38.522±0.00 3.327±0.00 13.822±9.06 9.511±6.30 12.047±7.75 37.023±26.37 26.206±25.53 3.344±0.76 12.959±9.59 16.005±7.57 30.296±14.32 11.622±2.43 29.907±4.63
ENSG00000132561 ENST00000254898 N/A N/A N/A 0.849±0.00 N/A N/A N/A N/A 2.535±0.00 N/A N/A 10.689±0.00 N/A N/A
ENST00000517321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518154 N/A 7.104±0.00 N/A 3.971±0.00 2.574±0.00 5.700±0.00 1.857±0.00 3.740±1.52 2.386±0.59 3.817±0.00 N/A 14.518±13.73 9.039±0.90 22.510±0.00
ENST00000518238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.121±0.00 N/A N/A N/A
ENST00000519585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520016 N/A N/A N/A N/A N/A N/A N/A N/A 4.734±0.00 N/A N/A 1.648±0.77 7.068±0.36 3.612±0.00
ENST00000520160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521041 N/A N/A N/A N/A N/A N/A N/A N/A 22.218±0.00 N/A N/A N/A N/A N/A
ENST00000521689 4.802±0.00 N/A N/A 1.214±0.66 4.428±0.52 2.631±0.52 1.884±0.38 N/A 6.964±0.00 N/A 0.562±0.07 13.223±8.70 6.595±0.11 N/A
ENST00000521952 N/A N/A N/A N/A N/A 4.606±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522025 3.223±0.00 9.481±0.00 N/A N/A 3.629±0.80 4.450±2.52 1.904±1.39 2.950±0.00 1.464±0.00 2.179±1.70 N/A 15.254±10.27 18.608±10.83 11.409±6.01
ENST00000522135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523490 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A
ENST00000523561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524308 4.840±0.00 10.152±0.00 N/A 3.678±0.00 11.771±0.00 5.504±3.96 1.221±0.76 4.904±3.84 1.066±0.00 4.107±2.64 0.396±0.00 19.374±5.65 14.743±3.54 33.758±0.00
ENSG00000156482 ENST00000287038 382.369±0.00 575.073±0.00 30.075±0.00 137.933±24.67 248.733±104.33 365.705±239.28 85.399±26.41 141.794±24.80 164.559±2.92 257.553±137.91 256.385±134.87 811.080±830.11 652.502±418.06 250.568±212.31
ENST00000396070 N/A N/A 17.139±0.00 N/A 55.999±0.00 N/A 70.025±0.00 22.718±0.00 N/A 143.225±108.15 56.284±0.00 336.998±0.00 225.717±0.00 107.870±0.00
ENST00000517489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243504 ENST00000491662 0.186±0.00 0.224±0.00 N/A 0.164±0.00 0.095±0.00 0.145±0.00 0.057±0.00 0.188±0.00 0.028±0.00 0.059±0.00 0.111±0.00 0.189±0.01 0.147±0.00 0.060±0.00
ENSG00000253639 ENST00000518873 N/A N/A N/A 0.054±0.00 0.156±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270682 ENST00000604497 0.215±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270861 ENST00000603405 N/A 0.265±0.00 0.915±0.00 4.475±0.00 0.099±0.00 N/A 2.282±0.00 N/A N/A N/A N/A 3.070±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022257 ENSMUST00000022867 113.282±24.53 263.789±21.28 75.397±5.65 20.870±0.74 66.179±9.61 69.371±5.86 49.937±4.66 62.009±8.17 15.460±6.68 62.646±2.61 13.552±1.36 110.065±38.20 17.216±10.27 49.788±23.55
ENSMUSG00000022324 ENSMUST00000022947 23.867±6.24 7.487±4.56 35.241±1.73 2.372±1.71 5.913±2.69 3.840±1.41 3.414±1.32 2.947±0.94 0.765±0.51 1.619±1.09 0.407±0.10 24.162±9.10 1.362±0.71 0.309±0.27
ENSMUST00000163455 21.323±7.09 2.428±0.69 22.668±0.28 0.571±0.05 4.671±3.29 4.337±1.67 3.514±0.00 1.525±0.34 0.707±0.12 1.162±0.66 N/A 9.663±4.57 0.204±0.00 0.341±0.40

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