C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132664 POLR3F 9606 + 20:18467127-18484643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377603 POLR3F-001 18467127-18484643 protein_coding
  ENST00000461589 POLR3F-003 18467389-18469368 processed_transcript
  ENST00000462997 POLR3F-002 18467389-18484643 processed_transcript
  ENST00000475192 POLR3F-006 18467431-18473011 processed_transcript
  ENST00000489753 POLR3F-005 18467448-18483563 processed_transcript
  ENST00000497333 POLR3F-004 18467395-18483826 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377603ENST00000462997ENST00000489753
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377603 N/A 1.289±0.00 0.344±0.00 1.590±0.04 0.586±0.00 1.154±0.00 0.658±0.14 N/A 2.177±0.00 1.831±0.00 0.579±0.00 2.898±1.15 1.675±0.00 2.696±0.29
ENST00000462997 3.273±0.00 3.724±0.00 N/A 3.263±0.30 2.651±1.16 3.408±0.00 1.563±0.00 3.884±0.00 1.195±0.00 1.033±0.00 0.866±0.00 2.891±1.68 2.088±1.15 4.701±0.73
ENST00000489753 N/A N/A N/A 3.284±0.00 3.275±0.00 2.099±0.00 N/A 2.203±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MW CIL_0002MW_0001 CGP 20:18383367-18484643
CIL_0002MV CIL_0002MV_0001 CGP 20:18467127-18497243

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003899 NAS:IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005666 NAS DNA-directed RNA polymerase III complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006359 NAS regulation of transcription from RNA polymerase III promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0032728 IMP positive regulation of interferon-beta production
GO:0045087 TAS innate immune response
GO:0045089 IMP positive regulation of innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012572 polr3f polymerase (RNA) III (DNA directed) polypeptide F protein_coding Danio_rerio
ENSMUSG00000027427 Polr3f polymerase (RNA) III (DNA directed) polypeptide F protein_coding Mus_musculus

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