C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) III (DNA directed) polypeptide F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027427 Polr3f 10090 + 2:144527718-144541995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028914 Polr3f-001 144527718-144541995 protein_coding
  ENSMUST00000110017 Polr3f-002 144527748-144535173 protein_coding
  ENSMUST00000134051 Polr3f-003 144536176-144538894 processed_transcript
  ENSMUST00000136999 Polr3f-004 144527742-144530695 processed_transcript
  ENSMUST00000143292 Polr3f-005 144532360-144538794 processed_transcript
  ENSMUST00000152311 Polr3f-006 144535941-144536628 processed_transcript
  ENSMUST00000155567 Polr3f-007 144527780-144534690 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028914ENSMUST00000110017ENSMUST00000136999ENSMUST00000143292ENSMUST00000155567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028914 0.901±0.38 0.832±0.47 4.950±0.10 4.948±2.62 0.967±0.00 0.824±0.27 0.913±0.46 1.477±0.60 3.113±1.41 1.502±0.51 1.962±0.33 3.638±1.70 4.209±0.89 1.350±0.40
ENSMUST00000110017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A
ENSMUST00000136999 1.244±0.42 1.524±0.28 N/A N/A 1.277±0.19 0.760±0.20 N/A 0.958±0.04 0.697±0.07 1.287±0.35 N/A 2.244±0.40 N/A N/A
ENSMUST00000143292 N/A N/A N/A N/A N/A 2.032±0.87 N/A N/A 1.787±0.13 N/A N/A 4.615±0.00 7.174±0.00 3.505±1.10
ENSMUST00000155567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.488±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MW CIL_0002MW_0002 CGP 2:144470557-144541995
CIL_0002MV CIL_0002MV_0002 CGP 2:144527718-144550869

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0006383 IBA transcription from RNA polymerase III promoter
GO:0032728 ISS positive regulation of interferon-beta production
GO:0045087 IEA innate immune response
GO:0045089 ISS positive regulation of innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012572 polr3f polymerase (RNA) III (DNA directed) polypeptide F protein_coding Danio_rerio
ENSG00000132664 POLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa protein_coding Homo_sapiens

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