C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377603 POLR3F-001 ENSG00000132664 9606 + 20:18467127-18484643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000377603
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000377603 1.289±0.00 0.344±0.00 1.590±0.04 0.586±0.00 1.154±0.00 0.658±0.14 2.177±0.00 1.831±0.00 0.579±0.00 2.898±1.15 1.675±0.00 2.696±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MW CIL_0002MW_0001 CGP 20:18383367-18484643
CIL_0002MV CIL_0002MV_0001 CGP 20:18467127-18497243

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003899 NAS:IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005666 NAS DNA-directed RNA polymerase III complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006359 NAS regulation of transcription from RNA polymerase III promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0032728 IMP positive regulation of interferon-beta production
GO:0045087 TAS innate immune response
GO:0045089 IMP positive regulation of innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028914 Polr3f-001 protein_coding Mus_musculus 0 1358
ENSMUST00000143292 Polr3f-005 processed_transcript Mus_musculus 0 734
ENSMUST00000134051 Polr3f-003 processed_transcript Mus_musculus 0 564
ENSMUST00000152311 Polr3f-006 processed_transcript Mus_musculus 0 322

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