C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002MV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132664-ENSG00000089050 CGP 9606 20:18467127-18497243
GeneTranscriptPositionBiotype
ENSG00000089050 (RBBP9)
retinoblastoma binding protein 9 		ENST00000337227 (RBBP9-001) 18486540-18497243 protein_coding
ENST00000491835 (RBBP9-004) 18489459-18497174 processed_transcript
ENST00000493184 (RBBP9-003) 18489288-18497180 processed_transcript
ENST00000622282 (RBBP9-201) 18489802-18497167 protein_coding
ENSG00000132664 (POLR3F)
polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa 		ENST00000377603 (POLR3F-001) 18467127-18484643 protein_coding
ENST00000461589 (POLR3F-003) 18467389-18469368 processed_transcript
ENST00000462997 (POLR3F-002) 18467389-18484643 processed_transcript
ENST00000475192 (POLR3F-006) 18467431-18473011 processed_transcript
ENST00000489753 (POLR3F-005) 18467448-18483563 processed_transcript
ENST00000497333 (POLR3F-004) 18467395-18483826 processed_transcript
ENSG00000225419 (RPL21P3)
ribosomal protein L21 pseudogene 3 		ENST00000395517 (RPL21P3-001) 18485265-18486052 processed_pseudogene
ENSG00000265137 (MIR3192)
microRNA 3192 		ENST00000584920 (MIR3192-201) 18470604-18470715 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002MV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027427-ENSMUSG00000027428 CGP 10090 2:144527718-144550869
GeneTranscriptPositionBiotype
ENSMUSG00000027427 (Polr3f)
polymerase (RNA) III (DNA directed) polypeptide F 		ENSMUST00000028914 (Polr3f-001) 144527718-144541995 protein_coding
ENSMUST00000110017 (Polr3f-002) 144527748-144535173 protein_coding
ENSMUST00000134051 (Polr3f-003) 144536176-144538894 processed_transcript
ENSMUST00000136999 (Polr3f-004) 144527742-144530695 processed_transcript
ENSMUST00000143292 (Polr3f-005) 144532360-144538794 processed_transcript
ENSMUST00000152311 (Polr3f-006) 144535941-144536628 processed_transcript
ENSMUST00000155567 (Polr3f-007) 144527780-144534690 processed_transcript
ENSMUSG00000027428 (Rbbp9)
retinoblastoma binding protein 9 		ENSMUST00000028915 (Rbbp9-001) 144542265-144550869 protein_coding
ENSMUST00000140340 (Rbbp9-002) 144543821-144550790 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MV_0001ENSG00000089050ENST00000337227ENST00000491835ENST00000493184ENST00000622282ENSG00000132664ENST00000377603ENST00000461589ENST00000462997ENST00000475192ENST00000489753ENST00000497333ENSG00000225419ENST00000395517ENSG00000265137ENST00000584920CIL_0002MV_0002ENSMUSG00000027427ENSMUST00000028914ENSMUST00000110017ENSMUST00000134051ENSMUST00000136999ENSMUST00000143292ENSMUST00000152311ENSMUST00000155567ENSMUSG00000027428ENSMUST00000028915ENSMUST00000140340
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MV_0001ENSG00000089050ENST00000337227ENST00000493184ENST00000622282ENSG00000132664ENST00000377603ENST00000462997ENST00000489753ENSG00000225419ENST00000395517ENSG00000265137ENST00000584920CIL_0002MV_0002ENSMUSG00000027427ENSMUST00000028914ENSMUST00000110017ENSMUST00000136999ENSMUST00000143292ENSMUST00000155567ENSMUSG00000027428ENSMUST00000028915ENSMUST00000140340
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089050 ENST00000337227 2.472±0.00 4.032±0.00 0.457±0.00 2.923±0.00 2.178±0.91 0.997±0.08 0.876±0.57 4.515±1.09 1.539±0.42 1.766±0.20 0.086±0.00 1.869±0.42 1.934±0.31 2.204±1.68
ENST00000491835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493184 N/A N/A N/A N/A 1.187±0.00 N/A N/A 2.983±0.00 N/A N/A N/A N/A N/A N/A
ENST00000622282 N/A N/A N/A 5.647±0.00 N/A 1.545±0.00 0.936±0.00 N/A 5.005±0.00 N/A 1.212±0.00 4.063±0.00 N/A N/A
ENSG00000132664 ENST00000377603 N/A 1.289±0.00 0.344±0.00 1.590±0.04 0.586±0.00 1.154±0.00 0.658±0.14 N/A 2.177±0.00 1.831±0.00 0.579±0.00 2.898±1.15 1.675±0.00 2.696±0.29
ENST00000461589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462997 3.273±0.00 3.724±0.00 N/A 3.263±0.30 2.651±1.16 3.408±0.00 1.563±0.00 3.884±0.00 1.195±0.00 1.033±0.00 0.866±0.00 2.891±1.68 2.088±1.15 4.701±0.73
ENST00000475192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489753 N/A N/A N/A 3.284±0.00 3.275±0.00 2.099±0.00 N/A 2.203±0.00 N/A N/A N/A N/A N/A N/A
ENST00000497333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225419 ENST00000395517 0.235±0.00 0.081±0.00 N/A 0.135±0.00 0.105±0.00 0.149±0.00 N/A 0.160±0.00 N/A 0.076±0.00 0.122±0.00 0.138±0.00 N/A 0.070±0.03
ENSG00000265137 ENST00000584920 N/A N/A N/A 0.203±0.00 0.985±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027427 ENSMUST00000028914 0.901±0.38 0.832±0.47 4.950±0.10 4.948±2.62 0.967±0.00 0.824±0.27 0.913±0.46 1.477±0.60 3.113±1.41 1.502±0.51 1.962±0.33 3.638±1.70 4.209±0.89 1.350±0.40
ENSMUST00000110017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A
ENSMUST00000134051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136999 1.244±0.42 1.524±0.28 N/A N/A 1.277±0.19 0.760±0.20 N/A 0.958±0.04 0.697±0.07 1.287±0.35 N/A 2.244±0.40 N/A N/A
ENSMUST00000143292 N/A N/A N/A N/A N/A 2.032±0.87 N/A N/A 1.787±0.13 N/A N/A 4.615±0.00 7.174±0.00 3.505±1.10
ENSMUST00000152311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.488±0.00
ENSMUSG00000027428 ENSMUST00000028915 16.857±4.12 10.753±1.25 14.899±0.96 10.022±6.03 8.045±1.06 5.749±1.04 3.999±0.44 20.551±3.17 5.887±1.69 12.900±0.93 1.974±0.36 18.715±5.65 7.196±3.69 1.519±0.62
ENSMUST00000140340 N/A N/A N/A 1.780±0.00 N/A N/A N/A N/A N/A N/A N/A 2.182±0.00 N/A 0.645±0.00

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