C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132670 PTPRA 9606 + 20:2864184-3039076 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216877 PTPRA-001 2873489-3039076 protein_coding
  ENST00000318266 PTPRA-002 2873683-3038674 protein_coding
  ENST00000356147 PTPRA-201 2923207-3038668 protein_coding
  ENST00000380393 PTPRA-003 2864184-3038674 protein_coding
  ENST00000399903 PTPRA-202 2873496-3038668 protein_coding
  ENST00000430705 PTPRA-007 2873683-2986849 protein_coding
  ENST00000431048 PTPRA-008 2873518-2965202 protein_coding
  ENST00000455631 PTPRA-004 2873420-3005104 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216877ENST00000318266ENST00000356147ENST00000399903ENST00000430705ENST00000431048ENST00000455631
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.767±0.00 3.892±0.00 N/A
ENST00000318266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.601±0.00 9.942±6.05 8.981±0.00
ENST00000356147 11.476±0.00 7.848±0.00 17.327±0.52 6.830±2.29 8.779±0.00 2.931±0.00 3.498±0.00 N/A 6.045±0.59 N/A 19.167±4.80 17.794±6.40 12.146±0.75
ENST00000399903 9.719±0.00 N/A 32.769±0.00 8.103±0.00 9.657±0.00 2.014±1.67 4.992±0.00 3.846±1.02 7.660±5.08 3.674±0.00 8.542±3.10 6.967±0.00 11.835±0.00
ENST00000430705 N/A N/A 27.559±0.00 N/A N/A 3.558±0.00 N/A N/A 16.371±0.00 N/A N/A N/A N/A
ENST00000431048 N/A N/A N/A N/A N/A N/A N/A 19.841±0.00 N/A 4.331±0.00 N/A 54.273±0.00 N/A
ENST00000455631 N/A N/A N/A N/A 8.949±0.00 2.969±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_00012E CIL_00012E_0001 CGP 20:2835314-2866732
CIL_00006B CIL_00006B_0001 CGP 20:2840703-3039076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004725 TAS:IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006468 IEA protein phosphorylation
GO:0006470 IEA protein dephosphorylation
GO:0007411 TAS axon guidance
GO:0008286 IEA insulin receptor signaling pathway
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043235 IDA receptor complex
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001769 ptpra protein tyrosine phosphatase, receptor type, A protein_coding Danio_rerio
ENSMUSG00000027303 Ptpra protein tyrosine phosphatase, receptor type, A protein_coding Mus_musculus

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