C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356147 PTPRA-201 ENSG00000132670 9606 + 20:2923207-3038668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000356147
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000356147 11.476±0.00 7.848±0.00 17.327±0.52 6.830±2.29 8.779±0.00 2.931±0.00 3.498±0.00 6.045±0.59 19.167±4.80 17.794±6.40 12.146±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_00012E CIL_00012E_0001 CGP 20:2835314-2866732
CIL_00006B CIL_00006B_0001 CGP 20:2840703-3039076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 TAS:IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006470 IEA protein dephosphorylation
GO:0007411 TAS axon guidance
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043235 IDA receptor complex
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028769 Ptpra-001 protein_coding Mus_musculus 0 3589
ENSMUST00000077303 Ptpra-002 protein_coding Mus_musculus 0 2623
ENSDART00000101956 ptpra-201 protein_coding Danio_rerio 0 1312
ENSDART00000126872 ptpra-202 protein_coding Danio_rerio 0 1310
ENSDART00000026903 ptpra-001 protein_coding Danio_rerio 0 1310
ENSMUST00000073961 Ptpre-201 protein_coding Mus_musculus 0 630

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