C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399903 PTPRA-202 ENSG00000132670 9606 + 20:2873496-3038668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399903
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399903 9.719±0.00 32.769±0.00 8.103±0.00 9.657±0.00 2.014±1.67 4.992±0.00 3.846±1.02 7.660±5.08 3.674±0.00 8.542±3.10 6.967±0.00 11.835±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_00012E CIL_00012E_0001 CGP 20:2835314-2866732
CIL_00006B CIL_00006B_0001 CGP 20:2840703-3039076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 TAS:IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006470 IEA protein dephosphorylation
GO:0007411 TAS axon guidance
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043235 IDA receptor complex
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028769 Ptpra-001 protein_coding Mus_musculus 0 3474
ENSMUST00000077303 Ptpra-002 protein_coding Mus_musculus 0 2623
ENSDART00000101956 ptpra-201 protein_coding Danio_rerio 0 1310
ENSDART00000126872 ptpra-202 protein_coding Danio_rerio 0 1310
ENSDART00000026903 ptpra-001 protein_coding Danio_rerio 0 1310
ENSMUST00000073961 Ptpre-201 protein_coding Mus_musculus 0 630

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