C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39, member 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133195 SLC39A11 9606 - 17:72645949-73092712 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255559 SLC39A11-001 72645949-73092693 protein_coding
  ENST00000542342 SLC39A11-002 72645950-73092688 protein_coding
  ENST00000578620 SLC39A11-004 73088688-73092687 protein_coding
  ENST00000579018 SLC39A11-005 73084835-73092712 protein_coding
  ENST00000579319 SLC39A11-014 72712822-72849776 nonsense_mediated_decay
  ENST00000579491 SLC39A11-011 72823607-72992949 processed_transcript
  ENST00000579732 SLC39A11-012 72837800-73092681 protein_coding
  ENST00000579988 SLC39A11-017 72647109-72725614 processed_transcript
  ENST00000580557 SLC39A11-003 72849634-73092676 protein_coding
  ENST00000581005 SLC39A11-009 73072269-73092678 processed_transcript
  ENST00000581581 SLC39A11-015 72712739-72849706 protein_coding
  ENST00000582179 SLC39A11-008 72947663-73092687 retained_intron
  ENST00000582769 SLC39A11-016 72648923-72992933 protein_coding
  ENST00000583146 SLC39A11-007 72849786-73089764 protein_coding
  ENST00000583507 SLC39A11-006 73091839-73092710 processed_transcript
  ENST00000583715 SLC39A11-013 72821605-72849804 protein_coding
  ENST00000584129 SLC39A11-010 72823698-72992932 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255559ENST00000542342ENST00000579491ENST00000579988ENST00000580557ENST00000582769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255559 2.772±0.00 4.475±0.00 1.126±0.00 2.966±0.00 2.711±1.36 2.049±0.13 1.345±0.00 5.253±0.70 5.644±0.00 1.608±0.97 0.115±0.00 4.702±1.93 6.013±3.83 2.440±0.31
ENST00000542342 3.153±0.00 N/A N/A 2.441±0.00 2.069±0.00 1.095±0.00 N/A N/A 2.345±0.00 0.787±0.21 N/A 2.129±0.38 1.855±0.36 1.142±0.00
ENST00000579491 N/A N/A N/A N/A 2.544±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579988 N/A N/A N/A N/A N/A N/A N/A N/A 1.059±0.00 N/A N/A N/A N/A N/A
ENST00000580557 N/A N/A 2.359±0.00 N/A N/A N/A 0.637±0.00 N/A N/A 2.132±0.00 N/A N/A N/A N/A
ENST00000582769 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.433±0.00 N/A N/A N/A 9.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096Z CIL_00096Z_0001 VISTA 17:72075015-72677314
CIL_00067E CIL_00067E_0001 CGP 17:72121020-73092712
CIL_00067F CIL_00067F_0001 CGP 17:72645949-73176633

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006829 IEA zinc ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089127 SLC39A11 solute carrier family 39, member 11 protein_coding Danio_rerio
ENSMUSG00000041654 Slc39a11 solute carrier family 39 (metal ion transporter), member 11 protein_coding Mus_musculus

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