C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (metal ion transporter), member 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041654 Slc39a11 10090 - 11:113244853-113650079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042657 Slc39a11-002 113244853-113565768 protein_coding
  ENSMUST00000071539 Slc39a11-001 113244853-113565756 protein_coding
  ENSMUST00000106633 Slc39a11-004 113244853-113565759 protein_coding
  ENSMUST00000123153 Slc39a11-006 113577643-113650070 processed_transcript
  ENSMUST00000125890 Slc39a11-007 113369728-113650071 protein_coding
  ENSMUST00000136392 Slc39a11-008 113559532-113650070 protein_coding
  ENSMUST00000146031 Slc39a11-005 113523587-113650079 protein_coding
  ENSMUST00000149034 Slc39a11-003 113463953-113565779 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042657ENSMUST00000071539ENSMUST00000106633ENSMUST00000125890ENSMUST00000149034
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042657 N/A 2.058±0.23 N/A N/A N/A N/A 0.406±0.21 N/A 1.824±0.00 N/A N/A N/A N/A 0.555±0.00
ENSMUST00000071539 4.545±0.78 4.777±1.75 3.968±1.60 2.048±0.24 4.696±1.39 34.004±2.52 0.763±0.14 8.281±1.84 5.736±2.36 5.047±0.91 0.777±0.26 7.147±0.93 3.795±1.24 1.141±0.37
ENSMUST00000106633 2.738±1.00 3.377±1.13 1.109±0.00 3.984±2.06 3.462±1.27 6.967±1.25 0.353±0.06 2.659±0.81 2.674±1.22 N/A 0.263±0.09 2.848±0.98 2.738±0.21 2.693±1.23
ENSMUST00000125890 5.350±0.00 10.134±1.59 N/A N/A 7.120±1.13 22.978±4.77 N/A 7.152±0.49 N/A 6.724±0.00 N/A 8.432±2.02 N/A 3.455±0.33
ENSMUST00000149034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.644±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096Z CIL_00096Z_0002 VISTA 11:112713161-113315514
CIL_00067E CIL_00067E_0002 CGP 11:112782224-113650079
CIL_00067F CIL_00067F_0002 CGP 11:113244853-113650079

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006829 IEA zinc ion transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089127 SLC39A11 solute carrier family 39, member 11 protein_coding Danio_rerio
ENSG00000133195 SLC39A11 solute carrier family 39, member 11 protein_coding Homo_sapiens

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