C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase type 13A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133657 ATP13A3 9606 - 3:194402672-194498364 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256031 ATP13A3-201 194402680-194468239 protein_coding
  ENST00000429136 ATP13A3-010 194402677-194425370 protein_coding
  ENST00000439040 ATP13A3-001 194402672-194498364 protein_coding
  ENST00000446356 ATP13A3-003 194460743-194468239 protein_coding
  ENST00000457986 ATP13A3-004 194459889-194486659 protein_coding
  ENST00000461660 ATP13A3-011 194403465-194413063 retained_intron
  ENST00000484023 ATP13A3-007 194430930-194432022 retained_intron
  ENST00000485194 ATP13A3-006 194447096-194453801 retained_intron
  ENST00000492983 ATP13A3-005 194459032-194459872 retained_intron
  ENST00000497567 ATP13A3-012 194413814-194420384 retained_intron
  ENST00000619199 ATP13A3-202 194402674-194452041 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256031ENST00000429136ENST00000439040ENST00000457986ENST00000485194ENST00000619199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256031 N/A N/A 4.507±0.00 N/A 2.072±0.00 N/A N/A N/A N/A N/A N/A 0.827±0.00 0.927±0.00 N/A
ENST00000429136 6.752±0.00 2.907±0.00 N/A 0.987±0.00 3.867±0.00 2.782±0.00 N/A 10.674±0.00 8.537±0.00 3.622±0.00 1.668±0.00 7.347±6.74 9.604±7.73 3.400±0.32
ENST00000439040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.895±0.00 N/A N/A
ENST00000457986 N/A N/A 38.734±0.00 N/A 32.523±0.00 62.289±0.00 19.594±0.00 106.030±0.00 N/A 36.661±0.00 7.491±0.00 48.078±0.00 N/A N/A
ENST00000485194 N/A N/A 20.281±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619199 N/A N/A 2.275±0.00 1.001±0.00 N/A N/A N/A N/A N/A 2.994±0.00 N/A 5.235±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A1 CIL_0009A1_0001 VISTA 3:193911571-194513668
CIL_0000NC CIL_0000NC_0001 CGP 3:194394821-194498364
CIL_0000NB CIL_0000NB_0001 CGP 3:194402672-194633689

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006812 IEA cation transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0019829 IEA cation-transporting ATPase activity
GO:0046872 IEA metal ion binding
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076622 ATP13A3 ATPase type 13A3 protein_coding Danio_rerio
ENSDARG00000086642 CABZ01111935.1 ATPase type 13A3 protein_coding Danio_rerio
ENSDARG00000086695 ATPase type 13A3 protein_coding Danio_rerio
ENSDARG00000088983 ATPase type 13A3 protein_coding Danio_rerio
ENSMUSG00000022533 Atp13a3 ATPase type 13A3 protein_coding Mus_musculus

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