C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133657-ENSG00000145014 CGP 9606 3:194402672-194633689
GeneTranscriptPositionBiotype
ENSG00000133657 (ATP13A3)
ATPase type 13A3 		ENST00000256031 (ATP13A3-201) 194402680-194468239 protein_coding
ENST00000429136 (ATP13A3-010) 194402677-194425370 protein_coding
ENST00000439040 (ATP13A3-001) 194402672-194498364 protein_coding
ENST00000446356 (ATP13A3-003) 194460743-194468239 protein_coding
ENST00000457986 (ATP13A3-004) 194459889-194486659 protein_coding
ENST00000461660 (ATP13A3-011) 194403465-194413063 retained_intron
ENST00000484023 (ATP13A3-007) 194430930-194432022 retained_intron
ENST00000485194 (ATP13A3-006) 194447096-194453801 retained_intron
ENST00000492983 (ATP13A3-005) 194459032-194459872 retained_intron
ENST00000497567 (ATP13A3-012) 194413814-194420384 retained_intron
ENST00000619199 (ATP13A3-202) 194402674-194452041 protein_coding
ENSG00000232873 (AC046143.6)
 ENST00000440847 (AC046143.6-001) 194562978-194564001 processed_pseudogene
ENSG00000252053 (RNU6-1101P)
RNA, U6 small nuclear 1101, pseudogene 		ENST00000516244 (RNU6-1101P-201) 194533503-194533583 snRNA
ENSG00000271483 (RP11-384A12.1)
 ENST00000605225 (RP11-384A12.1-001) 194471923-194472085 processed_pseudogene
CIL_0000NB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022533-ENSMUSG00000022537 CGP 10090 16:30312423-30550842
GeneTranscriptPositionBiotype
ENSMUSG00000022533 (Atp13a3)
ATPase type 13A3 		ENSMUST00000061350 (Atp13a3-001) 30312423-30388530 protein_coding
ENSMUST00000100013 (Atp13a3-201) 30312423-30388530 protein_coding
ENSMUST00000136065 (Atp13a3-002) 30385893-30388837 retained_intron
ENSMUST00000149882 (Atp13a3-005) 30354169-30357243 retained_intron
ENSMUST00000153656 (Atp13a3-004) 30361651-30388485 retained_intron
ENSMUSG00000022537 (Tmem44)
transmembrane protein 44 		ENSMUST00000089775 (Tmem44-002) 30511855-30550570 nonsense_mediated_decay
ENSMUST00000125260 (Tmem44-007) 30517730-30550539 retained_intron
ENSMUST00000125559 (Tmem44-003) 30518111-30550842 retained_intron
ENSMUST00000140402 (Tmem44-001) 30513691-30550578 protein_coding
ENSMUST00000144001 (Tmem44-004) 30513693-30550578 nonsense_mediated_decay
ENSMUST00000144491 (Tmem44-005) 30511855-30549946 retained_intron
ENSMUST00000149110 (Tmem44-006) 30513970-30540909 nonsense_mediated_decay
ENSMUST00000153380 (Tmem44-008) 30543713-30550528 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NB_0001ENSG00000133657ENST00000256031ENST00000429136ENST00000439040ENST00000446356ENST00000457986ENST00000461660ENST00000484023ENST00000485194ENST00000492983ENST00000497567ENST00000619199ENSG00000232873ENST00000440847ENSG00000252053ENST00000516244ENSG00000271483ENST00000605225CIL_0000NB_0002ENSMUSG00000022533ENSMUST00000061350ENSMUST00000100013ENSMUST00000136065ENSMUST00000149882ENSMUST00000153656ENSMUSG00000022537ENSMUST00000089775ENSMUST00000125260ENSMUST00000125559ENSMUST00000140402ENSMUST00000144001ENSMUST00000144491ENSMUST00000149110ENSMUST00000153380
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NB_0001ENSG00000133657ENST00000256031ENST00000429136ENST00000439040ENST00000457986ENST00000485194ENST00000619199ENSG00000232873ENST00000440847ENSG00000252053ENST00000516244ENSG00000271483ENST00000605225CIL_0000NB_0002ENSMUSG00000022533ENSMUST00000061350ENSMUST00000100013ENSMUST00000136065ENSMUST00000153656ENSMUSG00000022537ENSMUST00000089775ENSMUST00000125260ENSMUST00000125559ENSMUST00000140402ENSMUST00000144001ENSMUST00000144491ENSMUST00000149110
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133657 ENST00000256031 N/A N/A 4.507±0.00 N/A 2.072±0.00 N/A N/A N/A N/A N/A N/A 0.827±0.00 0.927±0.00 N/A
ENST00000429136 6.752±0.00 2.907±0.00 N/A 0.987±0.00 3.867±0.00 2.782±0.00 N/A 10.674±0.00 8.537±0.00 3.622±0.00 1.668±0.00 7.347±6.74 9.604±7.73 3.400±0.32
ENST00000439040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.895±0.00 N/A N/A
ENST00000446356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457986 N/A N/A 38.734±0.00 N/A 32.523±0.00 62.289±0.00 19.594±0.00 106.030±0.00 N/A 36.661±0.00 7.491±0.00 48.078±0.00 N/A N/A
ENST00000461660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485194 N/A N/A 20.281±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619199 N/A N/A 2.275±0.00 1.001±0.00 N/A N/A N/A N/A N/A 2.994±0.00 N/A 5.235±0.00 N/A N/A
ENSG00000232873 ENST00000440847 N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A 0.812±0.00 N/A N/A 0.123±0.00 N/A
ENSG00000252053 ENST00000516244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.00
ENSG00000271483 ENST00000605225 0.239±0.00 2.155±0.00 N/A 0.272±0.00 0.398±0.00 N/A N/A N/A 0.226±0.00 N/A N/A N/A N/A 0.341±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022533 ENSMUST00000061350 2.872±0.96 N/A 2.628±0.23 1.439±0.39 4.074±1.23 6.181±1.38 0.849±0.18 5.588±0.86 7.464±1.92 7.869±0.18 N/A 4.797±2.17 10.056±2.47 2.201±0.91
ENSMUST00000100013 6.044±0.14 N/A 8.791±3.44 3.471±1.08 7.584±1.63 3.106±0.49 3.823±0.47 2.014±0.26 4.530±1.53 10.061±0.94 4.371±0.82 5.692±3.22 8.131±2.21 0.761±0.39
ENSMUST00000136065 N/A 42.818±7.27 N/A N/A 23.473±2.13 33.691±6.86 N/A 4.773±0.00 17.192±5.97 N/A N/A 34.808±21.05 N/A N/A
ENSMUST00000149882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153656 N/A N/A N/A 10.998±0.00 N/A N/A N/A N/A N/A N/A N/A 24.744±0.00 39.391±0.00 3.469±0.00
ENSMUSG00000022537 ENSMUST00000089775 0.998±0.24 0.748±0.00 0.843±0.16 6.994±1.62 0.424±0.00 0.666±0.08 N/A 0.526±0.15 0.101±0.03 4.691±0.31 0.502±0.32 1.028±0.23 0.219±0.00 N/A
ENSMUST00000125260 2.013±0.28 1.508±0.53 0.598±0.00 11.505±3.01 1.282±0.27 1.493±0.24 1.538±0.50 1.035±0.31 0.259±0.09 8.338±0.44 N/A 2.105±0.59 0.173±0.13 0.160±0.00
ENSMUST00000125559 2.107±0.20 1.894±0.44 N/A 9.701±0.29 1.496±0.10 1.515±0.18 N/A 0.747±0.22 0.157±0.07 8.937±1.17 N/A 3.198±0.36 0.206±0.00 0.122±0.00
ENSMUST00000140402 1.336±0.45 1.468±0.18 N/A 8.949±3.29 1.424±0.20 1.676±0.49 0.931±0.00 0.932±0.08 0.255±0.12 5.083±0.28 0.491±0.00 1.747±0.36 0.738±0.55 0.278±0.00
ENSMUST00000144001 1.482±0.60 0.953±0.00 N/A N/A 0.839±0.03 N/A N/A 0.764±0.10 0.141±0.06 N/A 0.501±0.18 2.103±0.66 0.462±0.27 N/A
ENSMUST00000144491 0.987±0.30 N/A 0.456±0.00 7.058±1.04 0.662±0.04 0.577±0.03 0.944±0.22 0.607±0.19 0.118±0.06 3.766±0.09 0.422±0.00 0.554±0.03 0.230±0.11 0.073±0.00
ENSMUST00000149110 N/A N/A N/A 5.352±0.00 N/A N/A N/A N/A 0.221±0.07 N/A 0.634±0.00 N/A 1.547±0.00 N/A
ENSMUST00000153380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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