C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178732-ENSG00000133657 CGP 9606 3:194394821-194498364
GeneTranscriptPositionBiotype
ENSG00000133657 (ATP13A3)
ATPase type 13A3 		ENST00000256031 (ATP13A3-201) 194402680-194468239 protein_coding
ENST00000429136 (ATP13A3-010) 194402677-194425370 protein_coding
ENST00000439040 (ATP13A3-001) 194402672-194498364 protein_coding
ENST00000446356 (ATP13A3-003) 194460743-194468239 protein_coding
ENST00000457986 (ATP13A3-004) 194459889-194486659 protein_coding
ENST00000461660 (ATP13A3-011) 194403465-194413063 retained_intron
ENST00000484023 (ATP13A3-007) 194430930-194432022 retained_intron
ENST00000485194 (ATP13A3-006) 194447096-194453801 retained_intron
ENST00000492983 (ATP13A3-005) 194459032-194459872 retained_intron
ENST00000497567 (ATP13A3-012) 194413814-194420384 retained_intron
ENST00000619199 (ATP13A3-202) 194402674-194452041 protein_coding
ENSG00000178732 (GP5)
glycoprotein V (platelet) 		ENST00000401815 (GP5-001) 194394821-194398354 protein_coding
ENSG00000271483 (RP11-384A12.1)
 ENST00000605225 (RP11-384A12.1-001) 194471923-194472085 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000NC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047953-ENSMUSG00000022533 CGP 10090 16:30307686-30388837
GeneTranscriptPositionBiotype
ENSMUSG00000022533 (Atp13a3)
ATPase type 13A3 		ENSMUST00000061350 (Atp13a3-001) 30312423-30388530 protein_coding
ENSMUST00000100013 (Atp13a3-201) 30312423-30388530 protein_coding
ENSMUST00000136065 (Atp13a3-002) 30385893-30388837 retained_intron
ENSMUST00000149882 (Atp13a3-005) 30354169-30357243 retained_intron
ENSMUST00000153656 (Atp13a3-004) 30361651-30388485 retained_intron
ENSMUSG00000047953 (Gp5)
glycoprotein 5 (platelet) 		ENSMUST00000061190 (Gp5-201) 30307686-30310779 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NC_0001ENSG00000133657ENST00000256031ENST00000429136ENST00000439040ENST00000446356ENST00000457986ENST00000461660ENST00000484023ENST00000485194ENST00000492983ENST00000497567ENST00000619199ENSG00000178732ENST00000401815ENSG00000271483ENST00000605225CIL_0000NC_0002ENSMUSG00000022533ENSMUST00000061350ENSMUST00000100013ENSMUST00000136065ENSMUST00000149882ENSMUST00000153656ENSMUSG00000047953ENSMUST00000061190
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NC_0001ENSG00000133657ENST00000256031ENST00000429136ENST00000439040ENST00000457986ENST00000485194ENST00000619199ENSG00000178732ENST00000401815ENSG00000271483ENST00000605225CIL_0000NC_0002ENSMUSG00000022533ENSMUST00000061350ENSMUST00000100013ENSMUST00000136065ENSMUST00000153656ENSMUSG00000047953ENSMUST00000061190
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133657 ENST00000256031 N/A N/A 4.507±0.00 N/A 2.072±0.00 N/A N/A N/A N/A N/A N/A 0.827±0.00 0.927±0.00 N/A
ENST00000429136 6.752±0.00 2.907±0.00 N/A 0.987±0.00 3.867±0.00 2.782±0.00 N/A 10.674±0.00 8.537±0.00 3.622±0.00 1.668±0.00 7.347±6.74 9.604±7.73 3.400±0.32
ENST00000439040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.895±0.00 N/A N/A
ENST00000446356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457986 N/A N/A 38.734±0.00 N/A 32.523±0.00 62.289±0.00 19.594±0.00 106.030±0.00 N/A 36.661±0.00 7.491±0.00 48.078±0.00 N/A N/A
ENST00000461660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485194 N/A N/A 20.281±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619199 N/A N/A 2.275±0.00 1.001±0.00 N/A N/A N/A N/A N/A 2.994±0.00 N/A 5.235±0.00 N/A N/A
ENSG00000178732 ENST00000401815 0.022±0.00 0.202±0.00 0.123±0.00 0.070±0.00 0.040±0.00 0.110±0.10 0.024±0.00 0.080±0.03 0.015±0.00 0.081±0.02 N/A 0.077±0.06 0.066±0.00 0.015±0.00
ENSG00000271483 ENST00000605225 0.239±0.00 2.155±0.00 N/A 0.272±0.00 0.398±0.00 N/A N/A N/A 0.226±0.00 N/A N/A N/A N/A 0.341±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022533 ENSMUST00000061350 2.872±0.96 N/A 2.628±0.23 1.439±0.39 4.074±1.23 6.181±1.38 0.849±0.18 5.588±0.86 7.464±1.92 7.869±0.18 N/A 4.797±2.17 10.056±2.47 2.201±0.91
ENSMUST00000100013 6.044±0.14 N/A 8.791±3.44 3.471±1.08 7.584±1.63 3.106±0.49 3.823±0.47 2.014±0.26 4.530±1.53 10.061±0.94 4.371±0.82 5.692±3.22 8.131±2.21 0.761±0.39
ENSMUST00000136065 N/A 42.818±7.27 N/A N/A 23.473±2.13 33.691±6.86 N/A 4.773±0.00 17.192±5.97 N/A N/A 34.808±21.05 N/A N/A
ENSMUST00000149882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153656 N/A N/A N/A 10.998±0.00 N/A N/A N/A N/A N/A N/A N/A 24.744±0.00 39.391±0.00 3.469±0.00
ENSMUSG00000047953 ENSMUST00000061190 0.078±0.02 0.077±0.05 0.066±0.00 0.243±0.02 0.273±0.16 0.185±0.04 0.432±0.21 0.042±0.03 2.497±2.84 2.252±0.45 0.018±0.00 0.341±0.23 0.765±0.50 0.506±0.32

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