C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S15a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134419 RPS15A 9606 - 16:18781295-18790383 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322989 RPS15A-001 18781295-18790334 protein_coding
  ENST00000562935 RPS15A-004 18782968-18790334 nonsense_mediated_decay
  ENST00000563390 RPS15A-002 18782956-18790383 protein_coding
  ENST00000563579 RPS15A-007 18782981-18784825 protein_coding
  ENST00000565420 RPS15A-005 18782969-18790260 protein_coding
  ENST00000569083 RPS15A-006 18784021-18789119 protein_coding
  ENST00000569365 RPS15A-011 18782968-18790334 nonsense_mediated_decay
  ENST00000572008 RPS15A-013 18781991-18790334 nonsense_mediated_decay
  ENST00000573554 RPS15A-008 18788544-18790340 processed_transcript
  ENST00000574723 RPS15A-009 18782962-18790362 nonsense_mediated_decay
  ENST00000575669 RPS15A-003 18782968-18786795 processed_transcript
  ENST00000576008 RPS15A-010 18782968-18790362 nonsense_mediated_decay
  ENST00000576436 RPS15A-012 18782968-18789137 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000563390ENST00000572008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000563390 417.808±0.00 722.896±0.00 N/A N/A 409.836±0.00 651.723±0.00 249.855±0.00 255.513±0.00 362.441±0.00 1069.810±0.00 704.329±0.00 1121.400±810.65 801.202±261.24 311.399±176.32
ENST00000572008 N/A N/A 45.823±0.00 91.751±0.00 212.077±0.00 213.959±0.00 51.437±0.00 174.460±0.00 181.257±0.00 157.828±0.00 208.900±0.00 179.586±26.16 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 NAS RNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008284 IDA positive regulation of cell proliferation
GO:0009615 IDA response to virus
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045787 IDA positive regulation of cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010160 rps15a ribosomal protein S15a protein_coding Danio_rerio
ENSMUSG00000008683 Rps15a ribosomal protein S15A protein_coding Mus_musculus

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