C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000572008 RPS15A-013 ENSG00000134419 9606 - 16:18781991-18790334 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000572008
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000572008 45.823±0.00 91.751±0.00 212.077±0.00 213.959±0.00 51.437±0.00 174.460±0.00 181.257±0.00 157.828±0.00 208.900±0.00 179.586±26.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 NAS RNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008284 IDA positive regulation of cell proliferation
GO:0009615 IDA response to virus
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045787 IDA positive regulation of cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131374 Rps15a-001 protein_coding Mus_musculus 0 492
ENSMUST00000172457 Rps15a-201 protein_coding Mus_musculus 0 464
ENSMUST00000106588 Rps15a-004 protein_coding Mus_musculus 0 464
ENSMUST00000117476 Rps15a-ps6-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000087473 Rps15a-ps2-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000132586 Rps15a-ps5-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000121072 Rps15a-ps3-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000182051 Gm26983-001 processed_pseudogene Mus_musculus 0 412
ENSDART00000128613 rps15a-001 protein_coding Danio_rerio 0 381
ENSDART00000018822 rps15a-002 retained_intron Danio_rerio 5e-40 169
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000003 60
ENSMUST00000033498 Timm17b-001 protein_coding Mus_musculus 0.000001 58

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