C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pumilio RNA-binding family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134644 PUM1 9606 - 1:30931506-31065991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257075 PUM1-001 30931506-31065698 protein_coding
  ENST00000373741 PUM1-002 30932850-31065991 protein_coding
  ENST00000373742 PUM1-011 30933080-31065785 protein_coding
  ENST00000373747 PUM1-004 30931506-31065704 protein_coding
  ENST00000424085 PUM1-014 30931506-31065695 protein_coding
  ENST00000426105 PUM1-010 30932826-31065695 protein_coding
  ENST00000440538 PUM1-013 30932844-31065684 protein_coding
  ENST00000471894 PUM1-008 30966016-30974859 retained_intron
  ENST00000480602 PUM1-009 30995182-31065683 nonsense_mediated_decay
  ENST00000490546 PUM1-007 30966147-30980133 processed_transcript
  ENST00000498419 PUM1-005 30932844-30995059 protein_coding
  ENST00000498627 PUM1-006 30964888-30966380 retained_intron
  ENST00000524516 PUM1-017 31028758-31065695 retained_intron
  ENST00000525843 PUM1-012 30932059-31065726 protein_coding
  ENST00000525948 PUM1-015 30992441-31065695 nonsense_mediated_decay
  ENST00000525997 PUM1-022 30936724-30953744 protein_coding
  ENST00000526128 PUM1-019 30974649-30982145 processed_transcript
  ENST00000526215 PUM1-016 30981338-31065676 nonsense_mediated_decay
  ENST00000527498 PUM1-021 30945401-30964872 nonsense_mediated_decay
  ENST00000529846 PUM1-024 30936722-30953757 protein_coding
  ENST00000530669 PUM1-023 30933305-30945372 nonsense_mediated_decay
  ENST00000531867 PUM1-020 31059279-31061916 protein_coding
  ENST00000532678 PUM1-018 30967225-30995104 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257075ENST00000373747ENST00000424085ENST00000426105ENST00000440538ENST00000498419ENST00000525843ENST00000525948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257075 8.519±0.00 6.806±0.00 2.641±0.00 5.432±0.00 3.941±2.25 2.884±1.86 2.607±1.09 6.895±0.00 3.202±2.14 4.155±0.83 12.410±0.00 6.821±2.60 4.622±1.09 6.683±2.94
ENST00000373747 2.320±0.00 2.644±0.00 N/A 7.570±0.00 6.630±0.00 4.087±0.00 5.382±0.00 2.167±1.47 0.851±0.00 5.441±0.00 8.322±0.00 2.813±0.86 2.818±0.40 2.955±0.00
ENST00000424085 N/A N/A N/A N/A N/A N/A 2.757±0.00 N/A 1.268±0.00 4.609±0.00 N/A N/A N/A N/A
ENST00000426105 N/A N/A 1.492±0.00 3.212±0.00 3.790±0.00 1.898±0.00 1.393±0.00 2.300±0.00 N/A 2.619±0.00 2.029±0.00 N/A N/A N/A
ENST00000440538 4.870±0.00 N/A 2.377±0.00 2.716±0.00 N/A 2.256±0.00 0.792±0.00 N/A 7.082±0.00 N/A 5.108±3.10 4.436±0.08 5.793±0.00 4.339±0.00
ENST00000498419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.107±0.00 N/A 5.760±0.00
ENST00000525843 N/A N/A N/A 1.622±0.00 N/A 1.403±0.00 N/A N/A N/A N/A N/A 3.069±0.91 3.326±0.00 N/A
ENST00000525948 N/A N/A N/A N/A N/A 4.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005829 TAS cytosol
GO:0006417 IEA regulation of translation
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0044822 IDA poly(A) RNA binding
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023145 pum1 pumilio homolog 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000028580 Pum1 pumilio RNA-binding family member 1 protein_coding Mus_musculus

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