C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373747 PUM1-004 ENSG00000134644 9606 - 1:30931506-31065704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373747
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373747 2.320±0.00 2.644±0.00 7.570±0.00 6.630±0.00 4.087±0.00 5.382±0.00 2.167±1.47 0.851±0.00 5.441±0.00 8.322±0.00 2.813±0.86 2.818±0.40 2.955±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030315 Pum1-001 protein_coding Mus_musculus 0 6135
ENSMUST00000097862 Pum1-004 protein_coding Mus_musculus 0 5856
ENSMUST00000097864 Pum1-003 protein_coding Mus_musculus 0 5854
ENSMUST00000105992 Pum1-202 protein_coding Mus_musculus 0 4730
ENSMUST00000105991 Pum1-201 protein_coding Mus_musculus 0 3908
ENSMUST00000122847 Pum1-002 retained_intron Mus_musculus 0 1068
ENSMUST00000168361 Pum2-201 protein_coding Mus_musculus 0 946
ENSMUST00000163569 Pum2-006 protein_coding Mus_musculus 0 946
ENSMUST00000111122 Pum2-001 protein_coding Mus_musculus 0 907
ENSMUST00000111123 Pum2-002 protein_coding Mus_musculus 0 907
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 881
ENSMUST00000143277 Pum1-005 protein_coding Mus_musculus 0 732
ENSMUST00000178015 Pum2-202 protein_coding Mus_musculus 0 699
ENSMUST00000169089 Pum2-005 protein_coding Mus_musculus 0 699
ENSMUST00000165293 Pum2-004 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000020915 Pum2-003 protein_coding Mus_musculus 0 699
ENSDART00000086578 pum2-201 protein_coding Danio_rerio 0 285
ENSDART00000127137 pum1-202 protein_coding Danio_rerio 0 193

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