C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257075 PUM1-001 ENSG00000134644 9606 - 1:30931506-31065698 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257075
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257075 8.519±0.00 6.806±0.00 2.641±0.00 5.432±0.00 3.941±2.25 2.884±1.86 2.607±1.09 6.895±0.00 3.202±2.14 4.155±0.83 12.410±0.00 6.821±2.60 4.622±1.09 6.683±2.94

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005829 TAS cytosol
GO:0006417 IEA regulation of translation
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0044822 IDA poly(A) RNA binding
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030315 Pum1-001 protein_coding Mus_musculus 0 6072
ENSMUST00000097864 Pum1-003 protein_coding Mus_musculus 0 5895
ENSMUST00000097862 Pum1-004 protein_coding Mus_musculus 0 5836
ENSMUST00000105992 Pum1-202 protein_coding Mus_musculus 0 4710
ENSMUST00000105991 Pum1-201 protein_coding Mus_musculus 0 3949
ENSMUST00000122847 Pum1-002 retained_intron Mus_musculus 0 1057
ENSMUST00000111122 Pum2-001 protein_coding Mus_musculus 0 926
ENSMUST00000111123 Pum2-002 protein_coding Mus_musculus 0 926
ENSMUST00000168361 Pum2-201 protein_coding Mus_musculus 0 904
ENSMUST00000163569 Pum2-006 protein_coding Mus_musculus 0 904
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 854
ENSMUST00000143277 Pum1-005 protein_coding Mus_musculus 0 732
ENSMUST00000178015 Pum2-202 protein_coding Mus_musculus 0 726
ENSMUST00000169089 Pum2-005 protein_coding Mus_musculus 0 726
ENSMUST00000165293 Pum2-004 nonsense_mediated_decay Mus_musculus 0 726
ENSMUST00000020915 Pum2-003 protein_coding Mus_musculus 0 726
ENSDART00000086578 pum2-201 protein_coding Danio_rerio 0 285
ENSDART00000127137 pum1-202 protein_coding Danio_rerio 0 193

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