C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pumilio RNA-binding family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028580 Pum1 10090 + 4:130663321-130781564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030315 Pum1-001 130663321-130781564 protein_coding
  ENSMUST00000097862 Pum1-004 130663406-130780254 protein_coding
  ENSMUST00000097864 Pum1-003 130663386-130780266 protein_coding
  ENSMUST00000105991 Pum1-201 130663359-130781562 protein_coding
  ENSMUST00000105992 Pum1-202 130663359-130781562 protein_coding
  ENSMUST00000122847 Pum1-002 130663366-130718881 retained_intron
  ENSMUST00000143277 Pum1-005 130663367-130747003 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030315ENSMUST00000097862ENSMUST00000097864ENSMUST00000105991ENSMUST00000105992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030315 11.801±0.52 16.539±1.38 5.910±0.03 11.632±2.17 7.083±3.39 2.867±0.37 4.504±0.07 6.526±0.76 5.350±1.36 8.278±1.45 2.076±1.14 4.857±2.53 7.516±0.75 8.675±3.11
ENSMUST00000097862 8.056±0.00 11.917±2.61 N/A N/A 4.252±1.54 9.319±0.55 4.527±2.02 3.472±0.00 2.212±0.00 6.509±0.00 1.767±0.50 5.611±0.00 N/A 9.408±2.57
ENSMUST00000097864 11.562±4.98 10.574±3.54 2.923±0.40 7.530±2.20 9.133±3.75 7.290±2.13 5.760±0.37 6.927±1.69 4.326±2.09 8.031±0.40 1.596±0.00 13.393±2.92 6.311±4.14 13.991±2.17
ENSMUST00000105991 N/A N/A 5.065±0.34 13.183±3.56 N/A 4.182±0.00 2.293±0.00 3.578±0.00 4.565±0.58 N/A 1.112±0.25 5.261±0.00 5.661±0.30 N/A
ENSMUST00000105992 7.396±4.38 10.349±1.98 3.547±0.11 12.431±0.83 9.710±3.18 8.756±2.42 3.965±1.33 8.665±2.60 4.673±1.51 14.863±3.07 1.398±0.18 27.052±4.41 4.053±0.06 4.776±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AG CIL_0002AG_0002 CGP 4:130531602-130781564
CIL_0002AF CIL_0002AF_0002 CGP 4:130663321-130826319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023145 pum1 pumilio homolog 1 (Drosophila) protein_coding Danio_rerio
ENSG00000134644 PUM1 pumilio RNA-binding family member 1 protein_coding Homo_sapiens

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