C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRAF-type zinc finger domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135148 TRAFD1 9606 + 12:112125501-112153609 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257604 TRAFD1-201 112125545-112153603 protein_coding
  ENST00000412615 TRAFD1-001 112125501-112153609 protein_coding
  ENST00000547063 TRAFD1-007 112125554-112142148 nonsense_mediated_decay
  ENST00000548092 TRAFD1-006 112125557-112140910 protein_coding
  ENST00000548277 TRAFD1-008 112141953-112148213 retained_intron
  ENST00000549358 TRAFD1-005 112125545-112140986 protein_coding
  ENST00000550051 TRAFD1-002 112125538-112141491 retained_intron
  ENST00000552890 TRAFD1-003 112125560-112149808 nonsense_mediated_decay
  ENST00000552896 TRAFD1-004 112125563-112142295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257604ENST00000412615ENST00000547063ENST00000549358ENST00000550051ENST00000552890
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257604 N/A N/A N/A 0.395±0.00 0.940±0.00 2.264±0.00 N/A N/A 1.133±0.00 6.251±0.00 N/A 5.716±0.00 2.671±0.00 5.046±0.00
ENST00000412615 8.335±0.00 10.987±0.00 0.719±0.00 5.508±4.61 5.388±3.65 5.426±4.06 2.261±1.36 4.132±2.71 2.047±0.77 4.455±1.30 2.772±0.00 8.647±4.98 10.682±3.32 18.462±4.18
ENST00000547063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.866±0.00
ENST00000549358 N/A N/A 1.318±0.00 5.230±0.00 5.678±0.00 3.875±0.00 3.572±0.00 7.026±0.00 6.124±0.00 15.537±0.00 1.338±0.00 9.500±2.71 N/A N/A
ENST00000550051 N/A N/A N/A N/A 2.211±0.00 1.491±0.00 N/A 0.776±0.00 1.311±0.00 2.671±0.00 0.345±0.00 1.859±0.00 N/A N/A
ENST00000552890 N/A N/A N/A 0.906±0.00 N/A N/A 0.548±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0034097 IEA response to cytokine
GO:0045824 ISS negative regulation of innate immune response
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075123 TRAFD1 TRAF-type zinc finger domain containing 1 protein_coding Danio_rerio
ENSMUSG00000042726 Trafd1 TRAF type zinc finger domain containing 1 protein_coding Mus_musculus

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