C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRAF type zinc finger domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042726 Trafd1 10090 - 5:121371725-121385632 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042312 Trafd1-001 121371725-121385632 protein_coding
  ENSMUST00000120784 Trafd1-002 121371730-121385571 protein_coding
  ENSMUST00000126550 Trafd1-008 121384161-121385360 processed_transcript
  ENSMUST00000133138 Trafd1-004 121371725-121373131 retained_intron
  ENSMUST00000146185 Trafd1-005 121379597-121385629 protein_coding
  ENSMUST00000152265 Trafd1-007 121378631-121385409 protein_coding
  ENSMUST00000155379 Trafd1-006 121378877-121385577 protein_coding
  ENSMUST00000156158 Trafd1-003 121371725-121378823 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042312ENSMUST00000120784ENSMUST00000133138ENSMUST00000152265ENSMUST00000156158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042312 9.793±2.15 N/A 19.022±1.23 25.027±15.70 N/A N/A 8.970±1.66 4.086±2.35 5.282±0.99 8.874±3.71 6.097±3.18 8.141±2.80 5.363±2.15 37.565±14.39
ENSMUST00000120784 9.032±2.64 N/A 6.783±0.04 7.673±3.67 9.043±3.01 7.616±0.96 5.609±0.85 5.969±1.82 5.637±1.41 12.105±1.25 3.849±0.38 9.571±3.46 5.902±1.48 35.871±0.00
ENSMUST00000133138 N/A 4.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152265 N/A N/A N/A 38.025±0.00 N/A N/A N/A N/A N/A N/A N/A 41.352±0.00 27.799±6.92 244.946±0.00
ENSMUST00000156158 10.681±1.83 6.436±1.08 6.881±1.44 12.831±8.70 8.535±2.73 4.678±0.67 3.781±0.92 2.543±0.94 3.519±0.96 9.693±3.38 1.287±0.10 7.056±2.22 2.527±1.09 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0034097 IEA response to cytokine
GO:0045824 IMP negative regulation of innate immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075123 TRAFD1 TRAF-type zinc finger domain containing 1 protein_coding Danio_rerio
ENSG00000135148 TRAFD1 TRAF-type zinc finger domain containing 1 protein_coding Homo_sapiens

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