C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD50 interactor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135249 RINT1 9606 + 7:105532085-105567677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257700 RINT1-001 105532085-105567677 protein_coding
  ENST00000467392 RINT1-002 105532169-105547321 nonsense_mediated_decay
  ENST00000474123 RINT1-007 105550055-105555363 retained_intron
  ENST00000477285 RINT1-005 105541601-105542556 processed_transcript
  ENST00000482041 RINT1-004 105532181-105542457 nonsense_mediated_decay
  ENST00000493041 RINT1-003 105532184-105546918 protein_coding
  ENST00000493258 RINT1-006 105542240-105546996 retained_intron
  ENST00000497979 RINT1-008 105532212-105567676 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257700ENST00000467392ENST00000474123ENST00000482041ENST00000497979
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257700 1.165±0.00 N/A 1.158±0.00 1.199±0.50 1.222±0.00 0.781±0.40 0.912±0.00 N/A N/A 2.108±0.00 2.639±1.62 1.651±0.46 3.515±1.15
ENST00000467392 N/A N/A N/A 1.779±0.00 N/A N/A N/A 1.090±0.00 1.631±0.00 1.819±0.00 N/A N/A N/A
ENST00000474123 2.424±0.00 7.806±0.00 3.354±0.00 2.471±0.13 N/A N/A N/A 1.038±0.00 N/A 0.694±0.00 11.703±0.00 6.495±0.00 12.808±0.00
ENST00000482041 N/A N/A N/A 3.152±0.00 N/A N/A N/A N/A 4.753±0.00 N/A N/A N/A N/A
ENST00000497979 1.391±0.00 4.715±0.00 1.227±0.00 N/A 1.215±0.25 1.610±0.00 1.745±0.00 1.742±0.00 N/A 2.557±0.00 3.874±0.00 1.157±0.09 2.465±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040X CIL_00040X_0001 CGP 7:105439661-105567677

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007049 IEA cell cycle
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:1902504 IMP regulation of signal transduction involved in mitotic G2 DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005547 rint1 RAD50 interactor 1 protein_coding Danio_rerio
ENSMUSG00000028999 Rint1 RAD50 interactor 1 protein_coding Mus_musculus

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