C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD50 interactor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028999 Rint1 10090 + 5:23787711-23820369 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030852 Rint1-001 23787711-23820369 protein_coding
  ENSMUST00000112256 Rint1-006 23787741-23797057 processed_transcript
  ENSMUST00000115113 Rint1-002 23787715-23820297 protein_coding
  ENSMUST00000117783 Rint1-005 23787712-23793900 protein_coding
  ENSMUST00000120869 Rint1-004 23787711-23790003 protein_coding
  ENSMUST00000124680 Rint1-003 23787719-23820368 retained_intron
  ENSMUST00000132260 Rint1-007 23806838-23810170 retained_intron
  ENSMUST00000144709 Rint1-008 23811766-23815725 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030852ENSMUST00000112256ENSMUST00000115113ENSMUST00000117783ENSMUST00000120869ENSMUST00000124680ENSMUST00000132260
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030852 3.346±0.52 2.268±0.86 2.939±0.25 3.050±1.64 2.297±0.61 2.821±1.42 1.829±0.12 2.924±0.33 4.522±2.10 3.041±0.14 1.203±0.38 3.129±0.89 5.696±0.82 1.525±0.28
ENSMUST00000112256 N/A N/A N/A N/A N/A N/A 0.831±0.00 N/A N/A N/A 0.541±0.05 N/A 2.829±0.00 0.172±0.00
ENSMUST00000115113 N/A 1.363±0.00 N/A 4.746±0.00 N/A N/A N/A N/A N/A N/A N/A 2.589±0.00 7.925±1.41 1.241±0.00
ENSMUST00000117783 N/A 7.330±2.15 N/A N/A N/A 4.637±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120869 N/A N/A N/A N/A 1.775±0.00 N/A N/A N/A N/A 1.521±0.00 N/A N/A N/A N/A
ENSMUST00000124680 0.923±0.00 0.921±0.06 1.412±0.24 1.382±0.01 1.299±0.33 1.127±0.18 N/A N/A 2.668±0.88 N/A 0.402±0.15 1.955±0.77 1.574±0.01 0.534±0.06
ENSMUST00000132260 N/A 6.974±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040X CIL_00040X_0002 CGP 5:23740648-23820369

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:1902504 ISS regulation of signal transduction involved in mitotic G2 DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005547 rint1 RAD50 interactor 1 protein_coding Danio_rerio
ENSG00000135249 RINT1 RAD50 interactor 1 protein_coding Homo_sapiens

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