C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: testis derived transcript (3 LIM domains)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135269 TES 9606 + 7:116210493-116258783 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358204 TES-001 116210493-116258783 protein_coding
  ENST00000393481 TES-002 116222804-116258783 protein_coding
  ENST00000393484 TES-005 116250435-116252738 protein_coding
  ENST00000455989 TES-008 116210539-116250288 protein_coding
  ENST00000461440 TES-010 116210506-116249577 retained_intron
  ENST00000463746 TES-004 116251751-116252580 retained_intron
  ENST00000485009 TES-006 116222951-116250032 retained_intron
  ENST00000492891 TES-011 116210549-116257668 nonsense_mediated_decay
  ENST00000494384 TES-009 116250449-116252600 processed_transcript
  ENST00000496871 TES-007 116210561-116249806 retained_intron
  ENST00000496912 TES-003 116251507-116257576 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358204ENST00000393481ENST00000455989ENST00000461440ENST00000463746ENST00000492891ENST00000496912
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358204 9.861±0.00 25.357±0.00 2.603±0.00 0.721±0.00 12.776±2.42 28.589±11.40 3.149±1.80 7.245±6.96 11.617±9.97 13.067±4.34 0.076±0.00 18.387±8.80 14.282±4.66 14.731±3.34
ENST00000393481 N/A N/A 1.233±0.00 0.228±0.00 N/A N/A N/A N/A 24.170±0.00 N/A N/A N/A N/A N/A
ENST00000455989 N/A N/A N/A N/A N/A N/A N/A 0.700±0.00 N/A N/A N/A N/A N/A N/A
ENST00000461440 N/A N/A N/A N/A N/A N/A 0.831±0.00 N/A N/A N/A N/A N/A N/A 24.560±0.00
ENST00000463746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.383±0.00 N/A N/A 28.894±0.00
ENST00000492891 N/A N/A N/A N/A N/A N/A N/A 0.774±0.00 N/A N/A 0.181±0.00 N/A N/A 23.586±0.00
ENST00000496912 N/A N/A N/A 0.630±0.55 N/A N/A 0.915±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VN CIL_0007VN_0001 VISTA 7:115642067-116242568
CIL_00040R CIL_00040R_0001 CGP 7:115935148-116258783
CIL_0007SP CIL_0007SP_0001 VISTA 7:116053609-116657055
CIL_00063N CIL_00063N_0002 CGP 7:116210493-116508541

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IDA focal adhesion
GO:0008270 IEA:IDA zinc ion binding
GO:0008285 IMP negative regulation of cell proliferation
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051857 tes testis derived transcript (3 LIM domains) protein_coding Danio_rerio
ENSMUSG00000029552 Tes testis derived transcript protein_coding Mus_musculus
ENSMUSG00000068113 Gm4907 predicted gene 4907 protein_coding Mus_musculus
ENSMUSG00000090102 Gm4985 predicted gene 4985 protein_coding Mus_musculus

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