C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: testis derived transcript (3 LIM domains)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358204 TES-001 ENSG00000135269 9606 + 7:116210493-116258783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358204 9.861±0.00 25.357±0.00 2.603±0.00 0.721±0.00 12.776±2.42 28.589±11.40 3.149±1.80 7.245±6.96 11.617±9.97 13.067±4.34 0.076±0.00 18.387±8.80 14.282±4.66 14.731±3.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VN CIL_0007VN_0001 VISTA 7:115642067-116242568
CIL_00040R CIL_00040R_0001 CGP 7:115935148-116258783
CIL_0007SP CIL_0007SP_0001 VISTA 7:116053609-116657055
CIL_00063N CIL_00063N_0002 CGP 7:116210493-116508541

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IDA focal adhesion
GO:0008270 IEA:IDA zinc ion binding
GO:0008285 IMP negative regulation of cell proliferation
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115467 Tes-001 protein_coding Mus_musculus 0 1472
ENSMUST00000076654 Tes-002 protein_coding Mus_musculus 0 1434
ENSMUST00000116614 Gm4907-001 protein_coding Mus_musculus 0 1092
ENSMUST00000163718 Gm4907-201 protein_coding Mus_musculus 0 1035
ENSMUST00000118300 Gm4985-001 protein_coding Mus_musculus 0 1029
ENSMUST00000130207 Gm4764-001 processed_pseudogene Mus_musculus 0 944
ENSMUST00000121708 Gm4789-001 processed_pseudogene Mus_musculus 0 867
ENSMUST00000154266 Tes-004 protein_coding Mus_musculus 0 453

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