C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMYD family member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135632 SMYD5 9606 + 2:73214222-73227237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258100 SMYD5-002 73214238-73223106 nonsense_mediated_decay
  ENST00000389501 SMYD5-001 73214222-73227237 protein_coding
  ENST00000413491 SMYD5-003 73214222-73221213 nonsense_mediated_decay
  ENST00000443900 SMYD5-004 73214567-73221194 protein_coding
  ENST00000474652 SMYD5-005 73214590-73221922 processed_transcript
  ENST00000477038 SMYD5-007 73221176-73223167 retained_intron
  ENST00000486518 SMYD5-008 73225222-73225881 processed_transcript
  ENST00000491204 SMYD5-006 73219917-73220721 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258100ENST00000389501ENST00000443900ENST00000477038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A
ENST00000389501 4.433±0.00 12.992±0.00 1.143±0.00 4.182±2.43 6.558±0.00 2.347±2.20 2.937±2.58 4.680±4.53 1.303±0.83 2.294±2.16 1.987±1.93 10.297±5.34 9.422±3.28 5.664±0.52
ENST00000443900 N/A N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477038 N/A N/A N/A N/A N/A N/A N/A N/A 1.652±0.00 1.279±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RW CIL_0008RW_0001 VISTA 2:72647671-73248640
CIL_0003EF CIL_0003EF_0001 CGP 2:73202258-73227237
CIL_0003EK CIL_0003EK_0001 CGP 2:73214222-73233238

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071669 smyd5 SMYD family member 5 protein_coding Danio_rerio
ENSMUSG00000033706 Smyd5 SET and MYND domain containing 5 protein_coding Mus_musculus

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