C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMYD family member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389501 SMYD5-001 ENSG00000135632 9606 + 2:73214222-73227237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389501 4.433±0.00 12.992±0.00 1.143±0.00 4.182±2.43 6.558±0.00 2.347±2.20 2.937±2.58 4.680±4.53 1.303±0.83 2.294±2.16 1.987±1.93 10.297±5.34 9.422±3.28 5.664±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RW CIL_0008RW_0001 VISTA 2:72647671-73248640
CIL_0003EF CIL_0003EF_0001 CGP 2:73202258-73227237
CIL_0003EK CIL_0003EK_0001 CGP 2:73214222-73233238

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045693 Smyd5-001 protein_coding Mus_musculus 0 1526
ENSMUST00000152218 Smyd5-002 processed_transcript Mus_musculus 0 614
ENSMUST00000153749 Smyd5-006 processed_transcript Mus_musculus 0 601
ENSMUST00000130928 Smyd5-003 retained_intron Mus_musculus 0 599
ENSMUST00000134405 Smyd5-004 retained_intron Mus_musculus 0 281

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