C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET and MYND domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033706 Smyd5 10090 + 6:85431989-85446435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045693 Smyd5-001 85431989-85446435 protein_coding
  ENSMUST00000130928 Smyd5-003 85441740-85445197 retained_intron
  ENSMUST00000134405 Smyd5-004 85441630-85445443 retained_intron
  ENSMUST00000152218 Smyd5-002 85432002-85440342 processed_transcript
  ENSMUST00000153749 Smyd5-006 85442573-85445432 processed_transcript
  ENSMUST00000156322 Smyd5-005 85441725-85444960 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045693ENSMUST00000130928ENSMUST00000152218ENSMUST00000153749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045693 13.259±3.49 13.251±0.71 7.386±1.17 14.391±6.24 10.021±1.03 6.824±0.48 4.098±1.37 7.163±0.77 9.315±3.35 8.183±0.40 3.016±0.23 19.196±6.22 13.431±5.09 3.963±0.38
ENSMUST00000130928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.430±0.00
ENSMUST00000152218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.973±0.00 N/A N/A
ENSMUST00000153749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.625±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0003EF CIL_0003EF_0002 CGP 6:85423886-85446435
CIL_0003EK CIL_0003EK_0002 CGP 6:85431989-85451970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071669 smyd5 SMYD family member 5 protein_coding Danio_rerio
ENSG00000135632 SMYD5 SMYD family member 5 protein_coding Homo_sapiens

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