C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin-like 6A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136518 ACTL6A 9606 + 3:179562880-179588408 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392662 ACTL6A-201 179562920-179588398 protein_coding
  ENST00000429709 ACTL6A-001 179562880-179588408 protein_coding
  ENST00000450518 ACTL6A-002 179562886-179588407 protein_coding
  ENST00000461125 ACTL6A-016 179586488-179588241 retained_intron
  ENST00000467383 ACTL6A-013 179574353-179576275 retained_intron
  ENST00000467615 ACTL6A-014 179575010-179581008 processed_transcript
  ENST00000468767 ACTL6A-007 179562923-179575488 processed_transcript
  ENST00000479056 ACTL6A-015 179576376-179580955 retained_intron
  ENST00000484312 ACTL6A-018 179581164-179586708 retained_intron
  ENST00000486471 ACTL6A-012 179573234-179575210 retained_intron
  ENST00000487978 ACTL6A-011 179569815-179580701 nonsense_mediated_decay
  ENST00000490364 ACTL6A-009 179562959-179570241 protein_coding
  ENST00000491202 ACTL6A-006 179562923-179570391 retained_intron
  ENST00000494843 ACTL6A-008 179562930-179574563 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392662ENST00000429709ENST00000450518ENST00000490364ENST00000491202
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392662 N/A 7.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429709 N/A N/A 0.989±0.00 N/A 1.506±0.00 6.191±0.00 N/A 1.625±0.00 2.379±0.00 3.176±1.99 2.839±0.00 16.951±1.40 9.680±1.00 12.244±0.00
ENST00000450518 7.139±0.00 3.941±0.00 1.764±0.00 1.919±0.08 5.415±0.10 10.231±0.00 2.585±1.20 8.934±0.00 2.538±1.10 2.441±0.43 1.957±0.07 7.264±0.00 N/A 17.935±0.00
ENST00000490364 N/A N/A N/A N/A N/A N/A N/A 11.079±0.00 N/A N/A N/A N/A N/A N/A
ENST00000491202 N/A N/A 5.673±0.00 N/A 9.200±0.00 10.487±0.00 2.604±0.00 N/A 12.370±0.00 4.497±0.00 N/A 20.904±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FG CIL_0001FG_0001 CGP 3:179399202-179588408
CIL_00049Q CIL_00049Q_0002 CGP 3:179562880-179604654

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003407 IEP neural retina development
GO:0003682 TAS chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005886 IDA plasma membrane
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006325 TAS chromatin organization
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0031011 IDA Ino80 complex
GO:0031492 IDA nucleosomal DNA binding
GO:0035267 IDA NuA4 histone acetyltransferase complex
GO:0040008 IEA regulation of growth
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0043967 IDA histone H4 acetylation
GO:0043968 IDA histone H2A acetylation
GO:0071564 ISS npBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070828 actl6a actin-like 6A protein_coding Danio_rerio
ENSMUSG00000027671 Actl6a actin-like 6A protein_coding Mus_musculus

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