C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-like 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392662 ACTL6A-201 ENSG00000136518 9606 + 3:179562920-179588398 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENST00000392662
Transcript ID Adrenal
ENST00000392662 7.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FG CIL_0001FG_0001 CGP 3:179399202-179588408
CIL_00049Q CIL_00049Q_0002 CGP 3:179562880-179604654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003407 IEP neural retina development
GO:0003682 TAS chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005886 IDA plasma membrane
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006325 TAS chromatin organization
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0016514 IDA SWI/SNF complex
GO:0031011 IDA Ino80 complex
GO:0031492 IDA nucleosomal DNA binding
GO:0035267 IDA NuA4 histone acetyltransferase complex
GO:0040008 IEA regulation of growth
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0043967 IDA histone H4 acetylation
GO:0043968 IDA histone H2A acetylation
GO:0071564 ISS npBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029214 Actl6a-001 protein_coding Mus_musculus 0 1845
ENSMUST00000126144 Actl6a-003 protein_coding Mus_musculus 0 902
ENSMUST00000153779 Actl6a-002 retained_intron Mus_musculus 0 743
ENSMUST00000117875 Gm13607-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000043966 Mrpl47-001 protein_coding Mus_musculus 0 451

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