C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin-like 6A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027671 Actl6a 10090 + 3:32708546-32726968 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029214 Actl6a-001 32708546-32726968 protein_coding
  ENSMUST00000126144 Actl6a-003 32709164-32718656 protein_coding
  ENSMUST00000135400 Actl6a-004 32711383-32712170 retained_intron
  ENSMUST00000153779 Actl6a-002 32718567-32726968 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverLungOvaryPlacentaTestisENSMUST00000029214ENSMUST00000126144
Transcript ID Adipose Brain Colon Liver Lung Ovary Placenta Testis
ENSMUST00000029214 8.111±1.60 10.608±0.00 10.438±0.00 20.408±8.24 7.958±0.88 11.175±2.67 17.277±3.54 18.761±4.84
ENSMUST00000126144 N/A N/A N/A N/A N/A 37.051±0.00 37.729±0.00 49.392±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FG CIL_0001FG_0002 CGP 3:32580332-32726968
CIL_00049Q CIL_00049Q_0003 CGP 3:32708546-32737147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003407 IEA neural retina development
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005886 IEA plasma membrane
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0016514 IEA SWI/SNF complex
GO:0031011 IEA Ino80 complex
GO:0031492 IEA nucleosomal DNA binding
GO:0035267 ISS NuA4 histone acetyltransferase complex
GO:0040008 IEA regulation of growth
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0043967 ISS histone H4 acetylation
GO:0043968 ISS histone H2A acetylation
GO:0071564 IDA npBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070828 actl6a actin-like 6A protein_coding Danio_rerio
ENSG00000136518 ACTL6A actin-like 6A protein_coding Homo_sapiens

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