C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136521 NDUFB5 9606 + 3:179604690-179627647 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259037 NDUFB5-001 179604702-179624497 protein_coding
  ENST00000359944 NDUFB5-003 179604811-179624500 nonsense_mediated_decay
  ENST00000468210 NDUFB5-006 179604809-179624376 nonsense_mediated_decay
  ENST00000471112 NDUFB5-016 179616007-179624498 protein_coding
  ENST00000472629 NDUFB5-005 179604801-179624235 protein_coding
  ENST00000473500 NDUFB5-012 179604907-179624351 processed_transcript
  ENST00000476587 NDUFB5-011 179616975-179624377 retained_intron
  ENST00000477177 NDUFB5-007 179604816-179615408 retained_intron
  ENST00000480374 NDUFB5-009 179604841-179624267 nonsense_mediated_decay
  ENST00000482604 NDUFB5-008 179604826-179624091 protein_coding
  ENST00000488002 NDUFB5-004 179604690-179617418 retained_intron
  ENST00000491054 NDUFB5-010 179615206-179618522 retained_intron
  ENST00000493716 NDUFB5-014 179618227-179624100 retained_intron
  ENST00000493866 NDUFB5-002 179604791-179627647 protein_coding
  ENST00000496904 NDUFB5-013 179604890-179618477 processed_transcript
  ENST00000611971 NDUFB5-201 179604787-179624499 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259037ENST00000359944ENST00000468210ENST00000472629ENST00000476587ENST00000480374ENST00000482604ENST00000493866ENST00000611971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259037 N/A N/A 4.953±0.00 11.646±0.00 8.763±0.00 6.789±0.00 31.089±10.50 14.465±0.19 11.454±4.80 7.961±1.85 8.463±5.32 25.969±13.33 35.271±6.01 26.590±1.92
ENST00000359944 N/A 7.134±0.00 N/A N/A 9.547±0.00 N/A N/A 13.093±0.00 N/A N/A 3.771±0.00 6.166±1.35 N/A N/A
ENST00000468210 11.605±0.00 7.676±0.00 N/A 27.479±0.00 25.372±0.00 26.953±0.00 N/A N/A N/A N/A 9.131±0.00 N/A 9.426±0.00 31.255±0.00
ENST00000472629 10.824±0.00 7.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.387±0.00
ENST00000476587 N/A N/A N/A N/A N/A N/A 19.246±0.00 35.104±0.00 12.401±0.00 8.674±0.00 12.217±0.00 31.879±0.00 30.283±0.00 29.622±0.00
ENST00000480374 N/A N/A N/A N/A N/A 21.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482604 N/A N/A N/A N/A 21.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493866 1.668±0.00 1.787±0.00 0.825±0.00 7.700±0.00 2.405±1.37 0.544±0.00 3.134±0.57 1.760±0.00 1.089±0.00 0.722±0.00 1.634±0.00 0.865±0.00 N/A N/A
ENST00000611971 11.943±0.00 N/A N/A 15.645±3.39 13.478±0.00 8.459±6.31 N/A 11.321±0.00 N/A N/A 7.827±0.85 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049U CIL_00049U_0002 CGP 3:179588285-179627647
CIL_00049V CIL_00049V_0002 CGP 3:179604690-179789401

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005747 IDA mitochondrial respiratory chain complex I
GO:0006120 NAS mitochondrial electron transport, NADH to ubiquinone
GO:0008137 NAS NADH dehydrogenase (ubiquinone) activity
GO:0016021 IEA integral component of membrane
GO:0022904 TAS respiratory electron transport chain
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070824 ndufb5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 5 protein_coding Danio_rerio
ENSMUSG00000027673 Ndufb5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 protein_coding Mus_musculus

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